| autism | Autism dataset |
| avedist | Average minimal distance between batches |
| ba | Batch effect adjustment using a method of choice |
| baaddon | Addon batch effect adjustment |
| bametric | Diverse metrics for quality of (adjusted) batch data |
| bapred-internal | Internal bapred functions |
| bapred-package | The bapred package |
| batch | batch variable of dataset 'autism' |
| combatba | Batch effect adjustment using ComBat |
| combatbaaddon | Addon batch effect adjustment using ComBat |
| corba | Mean correlation before and after batch effect adjustment |
| diffexprm | Measure for performance of differential expression analysis... |
| fabatch | Batch effect adjustment using FAbatch |
| fabatchaddon | Addon batch effect adjustment using FAbatch |
| kldist | Kullback-Leibler divergence between density of within and... |
| meancenter | Batch effect adjustment by mean-centering |
| meancenteraddon | Addon batch effect adjustment for mean-centering |
| noba | No batch effect adjustment |
| nobaaddon | No addon batch effect adjustment |
| pcplot | Visualization of batch effects using Principal Component... |
| pvcam | Proportion of variation induced by class signal estimated by... |
| qunormaddon | Addon quantile normalization using "documentation by value"... |
| qunormtrain | Quantile normalization with "documentation by value" (Kostka... |
| ratioa | Batch effect adjustment using Ratio-A |
| ratioaaddon | Addon batch effect adjustment for Ratio-A |
| ratiog | Batch effect adjustment using Ratio-G |
| ratiogaddon | Addon batch effect adjustment for Ratio-G |
| rmaaddon | Addon RMA normalization using "documentation by value"... |
| rmatrain | RMA normalization with "documentation by value" (Kostka &... |
| sepscore | Separation score as described in Hornung et al. (2016) |
| skewdiv | Skewness divergence score |
| standardize | Batch effect adjustment by standardization |
| standardizeaddon | Addon batch effect adjustment for standardization |
| svaba | Batch effect adjustment using SVA |
| svabaaddon | Addon batch effect adjustment using frozen SVA |
| X | Covariate matrix of dataset 'autism' |
| y | Target variable of dataset 'autism' |
