plot.md
In basket: Basket Trial Analysis

Plotting works.

Code
  summary(mh1)
Output

  -- The MEM Model Call ----------------------------------------------------------

  mem_mcmc(responses = vemu_wide$responders, size = vemu_wide$evaluable, 
      name = vemu_wide$baskets, p0 = c(0.15, 0.15, 0.15, 0.2, 0.15, 
          0.15), mcmc_iter = 1000, mcmc_burnin = 10, cluster_analysis = TRUE)

  -- The Basket Summary ----------------------------------------------------------

  The Null Response Rates (alternative is greater):
                 NSCLC CRC (vemu) CRC (vemu+cetu) Bile Duct ECD or LCH   ATC
  Null            0.15      0.150           0.150     0.200      0.150 0.150
  Posterior Prob  1.00      0.028           0.019     0.147      0.999 0.998

  Posterior Mean and Median Response Rates:
         NSCLC CRC (vemu) CRC (vemu+cetu) Bile Duct ECD or LCH   ATC
  Mean   0.400      0.054           0.055     0.109      0.402 0.378
  Median 0.398      0.045           0.047     0.076      0.400 0.376

  Highest Posterior Density Interval with Coverage Probability 0.95:
              NSCLC CRC (vemu) CRC (vemu+cetu) Bile Duct ECD or LCH   ATC
  Lower Bound 0.249      0.000           0.001     0.002      0.247 0.219
  Upper Bound 0.554      0.129           0.124     0.336      0.560 0.545

  Posterior Effective Sample Size:
    NSCLC CRC (vemu) CRC (vemu+cetu) Bile Duct ECD or LCH    ATC
   38.326     49.614          55.301    11.213     36.319 32.711

  -- The Cluster Summary ---------------------------------------------------------

  Cluster 1                                           
   "CRC (vemu)" "CRC (vemu+cetu)" "Bile Duct"
  Cluster 2                           
   "NSCLC" "ECD or LCH" "ATC"

  The Null Response Rates (alternative is greater):
                             Cluster 1 Cluster 2
  Posterior for null of 0.15     0.086     0.999
  Posterior for null of 0.2      0.053     0.993

  Posterior Mean and Median Response Rates:
         Cluster 1 Cluster 2
  Mean       0.073     0.393
  Median     0.054     0.391

  Highest Posterior Density Interval with Coverage Probability 0.95:
              Cluster 1 Cluster 2
  Lower Bound     0.000     0.237
  Upper Bound     0.207     0.554

  Posterior Effective Sample Size:
   Cluster 1 Cluster 2
      22.269    35.024