snps: SNP data set

In bastah: Big Data Statistical Analysis for High-Dimensional Models

Description

Simulated Single Polymorphism Nucleotide (SNP) dataset containing n=100 observations of p=500 predictors (SNPs, 1=Homozygote1, 0=Heterozygote, -1=Homozygote2) and a one-dimensional response (1=case, 0=control). The dataset is generated using GWAsimulator.

Usage

data(snps)

Format

y

Phenotype (1=case, 0=control) of 100 individuals.

x

SNP genotype data (SNPs, 1=Homozygote1, 0=Heterozygote, -1=Homozygote2) of 500 simulated SNPs.

References

C. Li and M. Li (2008) GWAsimulator: a rapid whole-genome simulation program. Bioinformatics 24 (1): 140-142.

Examples

data(snps)

bastah documentation built on May 1, 2019, 10:14 p.m.