bayesTFR: Bayesian Fertility Projection

Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.

AuthorHana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu), Bailey Fosdick (bfosdick@uw.edu), Patrick Gerland (gerland@un.org)
Date of publication2017-01-06 01:14:07
MaintainerHana Sevcikova <hanas@uw.edu>
LicenseGPL (>= 2)
Version5.0-5
https://bayespop.csss.washington.edu

View on CRAN

Man pages

bayesTFR-internal: Internal Functions and datasets of bayesTFR

bayesTFR.mcmc: MCMC Simulation Object

bayesTFR.mcmc.meta: MCMC Simulation Meta Object

bayesTFR-package: Bayesian Fertility Projection

coda.mcmc.list: Convertion to coda's Objects

convert.trajectories: Converting TFR Trajectories into ACSII Files

country.names: Accessing Country Names

get.country.object: Accessing Country Information

get_cov_gammas: Covariance Matrices of Gamma Parameters

get.tfr.convergence: Accessing a Convergence Object

get.tfr.mcmc: Accessing MCMC Results

get.tfr.parameter.traces: Accessing MCMC Parameter Traces

get.tfr.prediction: Accessing a Prediction Object

get.tfr.trajectories: Accessing TFR Trajectories

get.thinned.tfr.mcmc: Creating and Accessing Thinned MCMCs

get.total.iterations: Total Number of Iterations

GoF.dl: Goodness of Fit of the Double Logistic Function

include: Inclusion Codes

plot-DLcurve: Plotting Posterior Distribution of the Double Logistic...

plot-pardensity: Plotting MCMC Parameter Density

plot-partraces: Plotting MCMC Parameter Traces

plot-trajectories: Output of Posterior Distribution of TFR Trajectories

predict-tfr: Generating Posterior Trajectories of the Total Fertility Rate

run-mcmc: Running Markov Chain Monte Carlo for Parameters of Total...

run.tfr3.mcmc: Running Markov Chain Monte Carlo for Parameters of Total...

run.tfr.mcmc.extra: Run MCMC for Extra Countries, Areas or Regions

summary-convergence: Summary of a TFR Convergence Object

summary-mcmc: Summary Statistics for TFR Markov Chain Monte Carlo Chains

summary-prediction: Summary of a Prediction of the Total Fertility Rate

tfr.diagnose: Convergence Diagnostics of TFR Markov Chain Monte Carlo

tfr.map: TFR World Map

tfr.median.set: Editing Medians of the Projection

tfr.parameter.names: Accessing Parameter Names

tfr.predict.extra: Generating Posterior Trajectories of the Total Fertility Rate...

tfr.raftery.diag: Raftery Diagnostics for Parameters of the Total Fertility...

UN_time: Dataset with UN-specific Time Coding

UN_variants: Dataset with UN-specific Coding of Variants

write.projection.summary: Writing Projection Summary Files

Functions

bayesTFR Man page
bayesTFR.convergence Man page
bayesTFR.mcmc Man page
bayesTFR.mcmc.meta Man page
bayesTFR.mcmc.set Man page
bayesTFR-package Man page
bayesTFR.prediction Man page
bdem.map.gvis Man page
bdem.parameter.traces Man page
burn.and.thin Man page
coda.list.mcmc Man page
coda.list.mcmc3 Man page
coda.mcmc Man page
coda.mcmc.bayesTFR.mcmc Man page
continue.tfr3.mcmc Man page
continue.tfr.mcmc Man page
convert.tfr.trajectories Man page
correlation_predictors Man page
country.names Man page
create.thinned.tfr.mcmc Man page
diag.thin.indep Man page
DLcurve Man page
DLcurve.plot Man page
DLcurve.plot.all Man page
do.convert.trajectories Man page
do.get.tfr.parameter.traces Man page
do.get.traces Man page
do.get.traces.bayesTFR.mcmc Man page
do.meta.ini Man page
do.plot.tfr.pardensity Man page
do.plot.tfr.partraces Man page
do.read.un.file Man page
do.write.projection.summary Man page
do.write.values.into.file Man page
extract.plot.args Man page
filter.traces Man page
find.tau.and.DLcountries Man page
get.all.parameter.names Man page
get.all.parameter.names.cs Man page
get.all.parameter.names.extended Man page
get.ar1.countries Man page
get.ar1.countries.index Man page
get.ar1.data Man page
get.ar1.parameters Man page
get.burned.tfr.traces Man page
get.countries.index Man page
get.countries.table Man page
get.countries.table.bayesTFR.mcmc.set Man page
get.countries.table.bayesTFR.prediction Man page
get.country.object Man page
get.cov.gammas Man page
get.data.for.country.imputed Man page
get.data.for.worldmap Man page
get.data.for.worldmap.bayesTFR.prediction Man page
get.data.imputed Man page
get.data.matrix Man page
get_eps_T Man page
get_eps_T_all Man page
get.friendly.variant.names Man page
get.full.par.names Man page
get.full.par.names.cs Man page
get.half.child.variant Man page
get.lambda Man page
get.mcmc.list Man page
get.mcmc.list.bayesTFR.mcmc Man page
get.mcmc.list.bayesTFR.mcmc.set Man page
get.mcmc.list.bayesTFR.prediction Man page
get.mcmc.list.list Man page
get.mcmc.meta Man page
get.median.from.prediction Man page
get.meta.only Man page
get.newTFRcolnames Man page
get.nr.countries Man page
get.nrest.countries Man page
get.observed.time.matrix.and.regions Man page
get.other.parameter.names Man page
get.other.parameter.names.cs Man page
get.prediction.periods Man page
get.prediction.years Man page
get.projection.summary.header Man page
get.stored.mcmc.length Man page
get.tfr3.convergence Man page
get.tfr3.convergence.all Man page
get.tfr3.mcmc Man page
get.tfr3.parameter.traces Man page
get.tfr3.parameter.traces.cs Man page
get.tfr.convergence Man page
get.tfr.convergence.all Man page
get.tfr.map.parameters Man page
get.TFRmatrix.and.regions Man page
get.tfr.mcmc Man page
get.tfr.parameter.traces Man page
get.tfr.parameter.traces.cs Man page
get.tfr.prediction Man page
get.tfr.reconstructed Man page
get.tfr.shift Man page
get.tfr.trajectories Man page
get.thinned.burnin Man page
get.thinned.tfr.mcmc Man page
get.thinning.index Man page
get.total.iterations Man page
get.totrans.parameter.names Man page
get.totrans.parameter.names.cs Man page
get.traj.ascii.header Man page
get.trajectories Man page
get.traj.quantiles Man page
get.trans.parameter.names Man page
get.trans.parameter.names.cs Man page
get.UN.variant.names Man page
has.mcmc.converged Man page
has.tfr3.mcmc Man page
has.tfr.mcmc Man page
has.tfr.prediction Man page
include Man page
include_2010 Man page
include_2012 Man page
include_2015 Man page
ini.tfr.with.DL Man page
init.nodes Man page
init.nodes.cont Man page
iso3166 Man page
load.tfr.parameter.traces Man page
load.tfr.parameter.traces.all Man page
load.tfr.parameter.traces.cs Man page
log_cond_abf_sd Man page
log_cond_const_sd Man page
log_cond_d_trans Man page
log_cond_sigma0 Man page
log_cond_sigma0.tau Man page
log_cond_Triangle_c4_trans Man page
log_cond_U Man page
log_like_gammas Man page
make.tfr.prediction Man page
mcmc.continue.chain Man page
mcmc.ini Man page
mcmc.ini.extra Man page
mcmc.meta.ini Man page
mcmc.meta.ini.extra Man page
mcmc.run.chain Man page
mcmc.run.chain.extra Man page
mcmc.update.abS Man page
mcmc.update.abSsigma0const Man page
mcmc.update.d Man page
mcmc.update.gamma Man page
mcmc.update.sigma0const Man page
mcmc.update.sigma0.tau Man page
mcmc.update.Triangle_c4 Man page
mcmc.update.U Man page
no.traces.loaded Man page
overwrite.colnames Man page
par.names.for.worldmap Man page
print.summary.bayesTFR.mcmc.set Man page
print.summary.bayesTFR.mcmc.set.meta Man page
print.summary.bayesTFR.prediction Man page
process.not.converged.parameters Man page
proposal_cov_gammas_cii Man page
read.tfr.file Man page
read.UNlocations Man page
read.UNtfr Man page
remove.tfr.traces Man page
run.tfr3.mcmc Man page
run.tfr.mcmc Man page
run.tfr.mcmc.extra Man page
set.wpp.extra Man page
set_wpp_regions Man page
stop.if.country.not.DL Man page
store.bayesTFR.meta.object Man page
store.bayesTFR.object Man page
store.mcmc Man page
store.traj.ascii Man page
summary.bayesTFR.convergence Man page
summary.bayesTFR.mcmc Man page
summary.bayesTFR.mcmc.set Man page
summary.bayesTFR.prediction Man page
tfr3.diagnose Man page
tfr3.parameter.names Man page
tfr3.parameter.names.cs Man page
tfr3.pardensity.cs.plot Man page
tfr3.pardensity.plot Man page
tfr3.partraces.cs.plot Man page
tfr3.partraces.plot Man page
tfr3.raftery.diag Man page
tfr.country.dlcurves Man page
tfr.diagnose Man page
tfr.dl.coverage Man page
tfr.get.dlcurves Man page
tfr.identical Man page
tfr.info Man page
tfr.map Man page
tfr.map.all Man page
tfr.map.gvis Man page
tfr.mcmc Man page
tfr.mcmc.list Man page
tfr.mcmc.sampling Man page
tfr.mcmc.sampling.extra Man page
tfr.median.adjust Man page
tfr.median.reset Man page
tfr.median.set Man page
tfr.median.shift Man page
tfr.parameter.names Man page
tfr.parameter.names.cs Man page
tfr.parameter.names.cs.extended Man page
tfr.parameter.names.extended Man page
tfr.pardensity.cs.plot Man page
tfr.pardensity.plot Man page
tfr.partraces.cs.plot Man page
tfr.partraces.plot Man page
tfr.predict Man page
tfr.predict.extra Man page
tfr.raftery.diag Man page
tfr.set.identical Man page
tfr.trajectories.plot Man page
tfr.trajectories.plot.all Man page
tfr.trajectories.table Man page
tfr.world.dlcurves Man page
thinindep Man page
UN_time Man page
UN_variants Man page
write.projection.summary Man page
write.table.into.file.cdep Man page
write.table.into.file.cindep Man page
write.values.into.file.cdep Man page
write.values.into.file.cindep Man page

Files

bayesTFR
bayesTFR/inst
bayesTFR/inst/CITATION
bayesTFR/inst/extdata
bayesTFR/inst/extdata/UN2008_last_obs.txt
bayesTFR/inst/extdata/my_tfr_template.txt
bayesTFR/inst/extdata/UN2010_last_obs.txt
bayesTFR/inst/ex-data
bayesTFR/inst/ex-data/bayesTFR.output
bayesTFR/inst/ex-data/bayesTFR.output/mc1
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country84.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country760.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country226.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country352.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/bayesTFR.mcmc.rda
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country638.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country458.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country833.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country454.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country646.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country140.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country826.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country659.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country428.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country792.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country528.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country882.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country480.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country804.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country498.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country148.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country762.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country8.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country426.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country428.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country492.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country792.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country178.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country752.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/sd_eps_tau.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country642.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country729.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country170.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country90.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country320.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country276.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country520.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country332.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country24.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country84.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country740.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country470.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country752.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country642.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country400.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country104.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country748.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country580.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country586.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country380.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country50.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country834.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country776.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country690.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country31.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country120.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country558.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country392.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country591.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country584.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country499.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country226.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country764.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country268.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country384.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country496.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country850.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country218.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country312.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country208.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country92.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country764.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country233.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country108.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country470.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country148.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country442.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country430.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country344.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country562.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country214.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country600.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country706.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country535.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country440.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country776.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country660.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country96.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country584.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country470.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country702.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country440.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country634.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country682.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country604.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country702.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country404.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country132.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country496.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country798.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country534.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/psi.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country578.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country660.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country148.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country112.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country480.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country586.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country516.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country348.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country184.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country332.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country192.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country398.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country630.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country862.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country642.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country292.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country620.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country804.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country434.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country674.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country32.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country768.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country504.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country4.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country132.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country764.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country364.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country232.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country478.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country608.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country276.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country4.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country598.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/d_country450.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/U_country340.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/gamma_country152.txt.bz2
bayesTFR/inst/ex-data/bayesTFR.output/mc1/Triangle_c4_country710.txt.bz2
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bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country666.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country620.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country833.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country659.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country504.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country380.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country724.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country580.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country208.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country795.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country324.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country404.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country500.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country768.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country184.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country124.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country598.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country729.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country246.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country188.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country203.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country20.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country50.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country328.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country417.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country558.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country40.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country674.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country292.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country454.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country112.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country540.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country442.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country68.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country376.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country876.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country140.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country192.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country233.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country584.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country458.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country660.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country626.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country8.rda
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bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country120.rda
bayesTFR/inst/ex-data/bayesTFR.output/predictions/traj_country275.rda
bayesTFR/inst/ex-data/bayesTFR.output/bayesTFR.mcmc.meta.rda
bayesTFR/tests
bayesTFR/tests/test_functions.R
bayesTFR/tests/run_tests.R
bayesTFR/src
bayesTFR/src/mcmc_likelihood.c
bayesTFR/NAMESPACE
bayesTFR/data
bayesTFR/data/UN_time.R
bayesTFR/data/include_2012.txt
bayesTFR/data/iso3166.R
bayesTFR/data/include_2015.txt
bayesTFR/data/include_2015.R
bayesTFR/data/proposal_cov_gammas_cii.rda
bayesTFR/data/include_2012.R
bayesTFR/data/include_2010.txt
bayesTFR/data/UN_variants.txt
bayesTFR/data/iso3166.txt
bayesTFR/data/include_2010.R
bayesTFR/data/UN_time.txt
bayesTFR/data/correlation_predictors.txt
bayesTFR/data/UN_variants.R
bayesTFR/R
bayesTFR/R/mcmc_likelihoods.R bayesTFR/R/wpp_data.R bayesTFR/R/run_mcmc.R bayesTFR/R/get_outputs.R bayesTFR/R/mcmc_ini.R bayesTFR/R/diagnostics.R bayesTFR/R/run_mcmc3.R bayesTFR/R/mcmc_storage.R bayesTFR/R/mcmc3_sampling.R bayesTFR/R/mcmc_sampling.R bayesTFR/R/mcmc_update.R bayesTFR/R/predict_tfr.R bayesTFR/R/plot_functions.R bayesTFR/R/zzz.R
bayesTFR/MD5
bayesTFR/DESCRIPTION
bayesTFR/ChangeLog
bayesTFR/man
bayesTFR/man/bayesTFR.mcmc.meta.Rd bayesTFR/man/run-mcmc.Rd bayesTFR/man/include.Rd bayesTFR/man/UN_time.Rd bayesTFR/man/get_cov_gammas.Rd bayesTFR/man/get.country.object.Rd bayesTFR/man/write.projection.summary.Rd bayesTFR/man/predict-tfr.Rd bayesTFR/man/get.tfr.parameter.traces.Rd bayesTFR/man/coda.mcmc.list.Rd bayesTFR/man/bayesTFR-package.Rd bayesTFR/man/tfr.median.set.Rd bayesTFR/man/tfr.predict.extra.Rd bayesTFR/man/summary-convergence.Rd bayesTFR/man/tfr.map.Rd bayesTFR/man/get.tfr.convergence.Rd bayesTFR/man/summary-mcmc.Rd bayesTFR/man/plot-DLcurve.Rd bayesTFR/man/plot-pardensity.Rd bayesTFR/man/get.thinned.tfr.mcmc.Rd bayesTFR/man/run.tfr3.mcmc.Rd bayesTFR/man/tfr.parameter.names.Rd bayesTFR/man/get.tfr.prediction.Rd bayesTFR/man/convert.trajectories.Rd bayesTFR/man/country.names.Rd bayesTFR/man/GoF.dl.Rd bayesTFR/man/tfr.diagnose.Rd bayesTFR/man/plot-trajectories.Rd bayesTFR/man/bayesTFR-internal.Rd bayesTFR/man/run.tfr.mcmc.extra.Rd bayesTFR/man/get.tfr.mcmc.Rd bayesTFR/man/plot-partraces.Rd bayesTFR/man/summary-prediction.Rd bayesTFR/man/get.tfr.trajectories.Rd bayesTFR/man/get.total.iterations.Rd bayesTFR/man/UN_variants.Rd bayesTFR/man/tfr.raftery.diag.Rd bayesTFR/man/bayesTFR.mcmc.Rd

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