bayescount: Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC

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A set of functions to allow analysis of count data (such as faecal egg count data) using Bayesian MCMC methods. Returns information on the possible values for mean count, coefficient of variation and zero inflation (true prevalence) present in the data. A complete faecal egg count reduction test (FECRT) model is implemented, which returns inference on the true efficacy of the drug from the pre- and post-treatment data provided, using non-parametric bootstrapping as well as using Bayesian MCMC. Functions to perform power analyses for faecal egg counts (including FECRT) are also provided.

Author
Matthew Denwood [aut, cre]
Date of publication
2015-04-20 11:46:52
Maintainer
Matthew Denwood <md@sund.ku.dk>
License
GPL-2
Version
0.9.99-5
URLs

View on CRAN

Man pages

bayescount
Analyse Count data using MCMC
bayescount.single
Analyse Count data using MCMC
fec.power
Count Data Power Analysis Calculations
fec.power.limits
Count Data Predicted Precision Calculations
fecrt.analysis
Analyse FECRT Data Using MCMC to Give a Probability...
fecrt.model
Create an MCMC model to analyse FECRT Data
fecrt.power
FECRT Power Analysis Calculations
fecrt.power.limits
FECRT Predicted Precision Calculations
likelihood
Calculate the (Log) Likelihood of Obtaining Data from a...
lnormal.params
Calculate the Log-Normal Mean and Standard Deviation Using...
maximise.likelihood
Calculate the Maximum Likelihood Parameters of a Continuous...
normal.params
Calculate the Normal Mean and Standard Deviation Using the...
run.model
Analyse Count Data Using Jags

Files in this package

bayescount
bayescount/src
bayescount/src/power.c
bayescount/NAMESPACE
bayescount/CHANGELOG
bayescount/R
bayescount/R/fec.power.R
bayescount/R/normal.lnormal.params.R
bayescount/R/invisible.R
bayescount/R/bayescount.single.R
bayescount/R/bayescount.R
bayescount/R/run.model.R
bayescount/R/likelihood.R
bayescount/R/fecrt.model.R
bayescount/R/fecrt.analysis.R
bayescount/R/maximise.likelihood.R
bayescount/R/fecrt.power.R
bayescount/MD5
bayescount/DESCRIPTION
bayescount/man
bayescount/man/bayescount.single.Rd
bayescount/man/fecrt.model.Rd
bayescount/man/lnormal.params.Rd
bayescount/man/fecrt.power.Rd
bayescount/man/likelihood.Rd
bayescount/man/fecrt.power.limits.Rd
bayescount/man/bayescount.Rd
bayescount/man/fecrt.analysis.Rd
bayescount/man/normal.params.Rd
bayescount/man/fec.power.Rd
bayescount/man/maximise.likelihood.Rd
bayescount/man/run.model.Rd
bayescount/man/fec.power.limits.Rd