Erik.Leppo@tetratech.com and jon.harcum@tetratech.com
#> Last Update: 2023-05-25 08:07:34.383787
Release 2023-04-04
gamTest.R: updated \|\| to \| to remove coercion to ‘logical(1)’ warning
Release 2018-07-09
# baytrends 1.0.5.9002
Release 2018-07-11
Update ANOVA table to allow for no parametric terms in gam formula
plyr
from Suggests to Imports in DESCRIPTIONdevelopment branch * Released - 2018-05-03 * branch of master based on v1.0.2 (release) * Clean up from check for CRAN * Note; NEWS.rmd. Add to git.ignore and .Rbuildignore * Error; sensAdjflow2.R ‘figNum’. Add QC check to ensure is defined. * Warning; undocumented dataset; added param and default to mergeFlow, gamTest, gamPlotCalc, and gamDiff. Also added to data.R (was missing). * Note; Namespace, importFrom. + importFrom(‘stats’, ‘BIC’, ‘StructTS’, ‘aggregate’, ‘approx’, ‘cov2cor’, ‘dnorm’, ‘filter’, ‘fitted’, ‘hat’, ‘integrate’, ‘logLik’, ‘lowess’, ‘lsfit’, ‘na.omit’, ‘na.pass’, ‘naresid’, ‘pchisq’, ‘ppoints’, ‘qf’, ‘residuals’, ‘sd’, ‘tsSmooth’, ‘update’, ‘var’) + importFrom(‘utils’, ‘flush.console’, ‘getS3method’, ‘modifyList’, ‘read.table’, ‘strOptions’, ‘write.table’) * Added QC to define figNum. + Copied from seasAdjflow2.R to detrended.flow.R and detrended.salinity.R * Add functions from swmr packages: + smwrBase; %cn%, group2row, isDateLike + smwrQW; mcenKM, mcenMLE, mcenROS, mdlMLE, mdlROS, pcodeNWISqw + smwrStats; rmse, vif * Adding the above led to others that needed to be added: + smwrGraphs; refLine, xyPlot + smwrBase; importRDB * Addition of xyPlot required more functions: + smwrGraphs; setPlot, linearPretty, setPage, timePlot, colorPlot * Remove cross references in ‘seealso’ for some of the imported smwr functions. + importRDB, isLike, linearPretty, refLinem, setPage, setplot, timePlot, cn * importFrom needed for 3 more packages in the newest smwr functions that were added. + importFrom(‘grDevices’, ‘Type1Font’, ‘dev.cur’, ‘extendrange’, ‘gray’, ‘pdfFonts’, ‘rainbow’) + importFrom(‘graphics’, ‘box’, ‘segments’, ‘strwidth’) + importFrom(‘stats’, ‘cov.wt’, ‘dist’, ‘model.matrix’) * Add more smwr package functions: + Base; dectime, dectime2Date + Graphs; datePretty, namePretty, numericData, setColor, setGD, setMargin , setMultiPlot, timePretty * Fix links in most recently added functions; comment out seealso. + datePretty, dectime, namePretty, setColor, setMargin, setMultiPlot * Add importFrom; grDevices colors * Add function from smwr packages; + smwrGraphs; month.USGS, renderPretty, setExplan, transData, linewt (framewt) * Add importFrom for the newly added functions. + importFrom(‘grDevices’, ‘col2rgb’, ‘rgb’) + importFrom(‘graphics’, ‘axis’) * Add function from smwr packages; + smwrGraphs; addCaption * Fix ‘assign’ to global environment in smwrGraphs_setPage.R + Line 180, comment out. Is setting to NULL as a precaution but function isn’t used by baytrends. * Data with ‘no visible bindig for global variable’ error. + Add a line at the beginning of each affected function to reference the data; baytrends::xyz. + Peter Dalgaard’s proposed solution, 2014-Aug - no-visible-binding-for-global-variable-for-data-sets-in-a-package + .chkParameter; parameterList + analysisOrganizeData; parameterList, stationMasterList, layerLukup + selectData; stationMasterList, parameterList, layerLukup * gamDiff, bad usage of stat. Undefined. Line 193. + Change to iSpec\$stat * Remaining issues: + .gamPlotCalc; salinity.detrended + .mergeSalinity; salinity.detrended + gamDiff; salinity.detrended
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