panc8_small: A small example version of the pancreas scRNA-seq dataset

In bbknnR: Perform Batch Balanced KNN in R

A small example version of the pancreas scRNA-seq dataset

Description

A subsetted version of the pancreas scRNA-seq dataset to test BBKNN

Usage

panc8_small

Format

A Seurat object with the following slots filled

assays

Currently only contains one assay ("RNA" - scRNA-seq expression data)

• counts - Raw expression data

• data - Normalized expression data

• scale.data - Scaled expression data

• var.features - names of the current features selected as variable

• meta.features - Assay level metadata such as mean and variance

meta.data

Cell level metadata

active.assay

Current default assay

active.ident

Current default idents

graphs

Empty

reductions

Dimensional reductions: currently PCA

version

Seurat version used to create the object

commands

Command history

Source

SeuratData https://github.com/satijalab/seurat-data

bbknnR documentation built on May 29, 2024, 3:32 a.m.