Man pages for bbsBayes
Hierarchical Bayesian Analysis of North American BBS Data
| bbsBayes-deprecated | Deprecated functions in package 'bbsBayes'. |
| bird_sample | Sample point count data per species (Pacific Wren only) |
| extract_index_data | Extract index data |
| fetch_bbs_data | Fetch Breeding Bird Survey dataset |
| generate_indices | Generate regional annual indices of abundance continent and... |
| generate_map | Generate a map of trends by strata. |
| generate_trends | Generate regional trends continent and strata and optionally... |
| geofacet_plot | Generate a geofacet plot of population trajectories by... |
| get_composite_regions | Get the area of each strata |
| get_final_values | Get final values of JAGS model |
| get_mcmc_list | Obtain MCMC list from jagsUI object |
| get_prepared_data | Get the prepared species dataset used for JAGS |
| get_species_aou | Get BBS numerical code of a species |
| get_strata_area | Get the area of each strata |
| load_bbs_data | Load Breeding Bird Survey dataset into R Session |
| load_map | Load a map of of the geographic strata. |
| load_sample_data | Load Sample Breeding Bird Survey dataset into R Session |
| lppd | Calculate log posterior predictive density |
| model_to_file | Save model to text file |
| plot_indices | Generate plots of index trajectories by stratum |
| prepare_data | Wrangle data to use for modelling input |
| r_hat | Generate Gelman-Rubin's R-Hat statistic |
| route_sample | Sample route data per year run (Pacific Wren only) |
| run_model | Run JAGS model for prepared species data |
| species_sample | Sample North American bird species list (Pacific Wren only) |
| stratify | Stratify raw Breeding Bird Survey data |
