bbsBayes-deprecated | Deprecated functions in package 'bbsBayes'. |
bird_sample | Sample point count data per species (Pacific Wren only) |
extract_index_data | Extract index data |
fetch_bbs_data | Fetch Breeding Bird Survey dataset |
generate_indices | Generate regional annual indices of abundance continent and... |
generate_map | Generate a map of trends by strata. |
generate_trends | Generate regional trends continent and strata and optionally... |
geofacet_plot | Generate a geofacet plot of population trajectories by... |
get_composite_regions | Get the area of each strata |
get_final_values | Get final values of JAGS model |
get_mcmc_list | Obtain MCMC list from jagsUI object |
get_prepared_data | Get the prepared species dataset used for JAGS |
get_species_aou | Get BBS numerical code of a species |
get_strata_area | Get the area of each strata |
load_bbs_data | Load Breeding Bird Survey dataset into R Session |
load_map | Load a map of of the geographic strata. |
load_sample_data | Load Sample Breeding Bird Survey dataset into R Session |
lppd | Calculate log posterior predictive density |
model_to_file | Save model to text file |
plot_indices | Generate plots of index trajectories by stratum |
prepare_data | Wrangle data to use for modelling input |
r_hat | Generate Gelman-Rubin's R-Hat statistic |
route_sample | Sample route data per year run (Pacific Wren only) |
run_model | Run JAGS model for prepared species data |
species_sample | Sample North American bird species list (Pacific Wren only) |
stratify | Stratify raw Breeding Bird Survey data |
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