Darwinazing biodiversity data in R (this package is in preparation stage and soon will be submitted to CRAN).
"Darwin Core is a standard maintained by the Darwin Core maintenance group. It includes a glossary of terms intended to facilitate the sharing of information about biological diversity by providing identifiers, labels, and definitions." Darwin Core
bdDwC
is R package (soon to be submitted to CRAN) that user can Darwinize given data using shiny
application interface. This package is part of bd-R
and soon will be implemented into two other packages bdchecks
and bdclean
This package lets user to:
All these actions are done within reactive shiny
environment.
Install bdDwC
with:
devtools::install_github("bd-R/bdDwC")
Run bdDwC
shiny
app with:
library(bdDwC)
runDwC()
To use bdDwC
from the command line:
Load bdDwC
package
library(bdDwC)
bdDwC
contains Indian Reptile dataset bdDwC:::dataReptiles
.
Darwinize data with darwinizeNames
(replace bdDwC:::dataReptiles
with wanted dataset):
result <- darwinizeNames(dataUser = bdDwC:::dataReptiles,
dataDWC = bdDwC:::dataDarwinCloud$data)
Rename your data using bdDwC
with renameUserData
:
# Replace `bdDwC:::dataReptiles` with wanted dataset
renameUserData(bdDwC:::dataReptiles, result)
To get newest version of Darwin Cloud Data run:
downloadCloudData()
which will download data from the remote repository and extract field and standard names.
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