beanz: Bayesian Analysis of Heterogeneous Treatment Effect

It is vital to assess the heterogeneity of treatment effects (HTE) when making health care decisions for an individual patient or a group of patients. Nevertheless, it remains challenging to evaluate HTE based on information collected from clinical studies that are often designed and conducted to evaluate the efficacy of a treatment for the overall population. The Bayesian framework offers a principled and flexible approach to estimate and compare treatment effects across subgroups of patients defined by their characteristics. This package allows users to explore a wide range of Bayesian HTE analysis models, and produce posterior inferences about HTE.

Author
Chenguang Wang [aut, cre], Ravi Varadhan [aut], Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Date of publication
2016-11-14 11:15:01
Maintainer
Chenguang Wang <cwang68@jhmi.edu>
License
GPL (>= 3)
Version
1.7.1

View on CRAN

Man pages

beanz-package
Bayesian Approaches for HTE Analysis
call.stan
Call STAN models
comp.stan
Comparison of posterior treatment effects
r.gailsimon
Gail-Simon Test
r.get.subgrp.raw
Get subgroup treatment effect estimation and variance
r.plot.trace
Trace plot of 'rstan' samples
r.pred.subgrp.effect
Predictive Distribution
r.rpt.tbl
Summary table of treatment effects
r.subgrp.effect
Get subgroup treatment effect estimation and variance
run.beanz
Run Web-Based BEANZ application
solvd.sub
Subject level data from SOLVD trial
summary.stan
Posterior subgroup treatment effects

Files in this package

beanz
beanz/inst
beanz/inst/shiny
beanz/inst/shiny/ui.R
beanz/inst/shiny/server.R
beanz/inst/shiny/www
beanz/inst/shiny/www/gwd_workspace.json
beanz/inst/shiny/www/beanz_do.html
beanz/inst/shiny/www/info.png
beanz/inst/shiny/www/beanz_solvd.html
beanz/inst/shiny/www/beanz_need.html
beanz/inst/shiny/www/beanz_rst.html
beanz/inst/shiny/www/mathmodels.html
beanz/inst/shiny/www/beanz_anoint.html
beanz/inst/shiny/www/warning.png
beanz/inst/shiny/www/models.html
beanz/inst/shiny/www/help.png
beanz/inst/shiny/www/beanz.js
beanz/inst/shiny/www/anoint_package_tutorial.pdf
beanz/inst/shiny/www/beanz_gailsimon.html
beanz/inst/shiny/www/error.png
beanz/inst/shiny/www/success.png
beanz/inst/shiny/www/texturebg.png
beanz/inst/shiny/www/styles.css
beanz/inst/shiny/www/beanz_footer.html
beanz/inst/shiny/beanz_ui.R
beanz/inst/shiny/report
beanz/inst/shiny/report/report.Rmd
beanz/inst/doc
beanz/inst/doc/beanz_vignettes.html
beanz/inst/doc/beanz_vignettes.R
beanz/inst/doc/beanz_vignettes.Rmd
beanz/exec
beanz/exec/srs.stan
beanz/exec/sr.stan
beanz/exec/nse.stan
beanz/exec/ds.stan
beanz/exec/eds.stan
beanz/exec/bs.stan
beanz/exec/fs.stan
beanz/src
beanz/src/Makevars
beanz/src/Modules.cpp
beanz/src/include
beanz/src/include/models.hpp
beanz/NAMESPACE
beanz/data
beanz/data/solvd.sub.rda
beanz/R
beanz/R/beanz_present.R
beanz/R/beanz_package.R
beanz/R/beanz_stan.R
beanz/R/beanz_shiny.R
beanz/R/stanmodels.R
beanz/R/beanz_data.R
beanz/R/beanz_subgrp.R
beanz/R/zzz.R
beanz/vignettes
beanz/vignettes/beanz_vignettes.Rmd
beanz/MD5
beanz/build
beanz/build/vignette.rds
beanz/DESCRIPTION
beanz/man
beanz/man/beanz-package.Rd
beanz/man/r.gailsimon.Rd
beanz/man/r.pred.subgrp.effect.Rd
beanz/man/solvd.sub.Rd
beanz/man/r.plot.trace.Rd
beanz/man/r.subgrp.effect.Rd
beanz/man/call.stan.Rd
beanz/man/comp.stan.Rd
beanz/man/summary.stan.Rd
beanz/man/r.rpt.tbl.Rd
beanz/man/r.get.subgrp.raw.Rd
beanz/man/run.beanz.Rd
beanz/cleanup
beanz/tools
beanz/tools/make_cpp.R
beanz/cleanup.win