Nothing
This document evaluates computation times and speedup factors using set_default_options()
and set_fast_options()
. The same functions from benchmark.R
are applied for both option settings. Results are summarized below.
suppressMessages(library(strucchange)) suppressMessages(library(bfast)) test.env = new.env() source("benchmark.R", local = test.env ) # find all functions in environment fs = names(which(sapply(ls(test.env), function(x) {return(class(get(x, envir = test.env)))}) == "function")) results.default = data.frame(f=NULL,time=NULL) results.fast = data.frame(f=NULL,time=NULL) for (i in 1:length(fs)) { f = get(fs[i],envir = test.env) set_default_options() results.default= rbind(results.default, data.frame(f=fs[i], time=system.time(f())[3], row.names = NULL)) set_fast_options() results.fast = rbind(results.fast, data.frame(f=fs[i], time=system.time(f())[3], row.names = NULL)) }
suppressMessages(library(knitr)) r = merge(results.default,results.fast,by="f", suffixes=c(".default",".fast")) r$speedup = r$time.default / r$time.fast kable(r,format="markdown")
#par(mar=c(5,4,3,2)) par(oma=c(5,0,0,0)) par(cex=0.8) # divide into groups based un first part of the function name fgroups = unique(sapply(strsplit(as.character(r$f),"\\."), function(x) return(x[1]))) for (fg in fgroups) { r.sub = r[which(grepl(paste(fg,"\\.",sep=""),as.character(r$f))),] barplot(horiz=F,height = t(as.matrix(r.sub[,c("time.default","time.fast")])), beside = T, names.arg = r.sub$f, ylab="Computation time (seconds)", legend.text=c("set_default_options()", "set_fast_options()"), las=3, args.legend=list(x="topleft"), main=fg) }
cat("## Function details\n") for (i in 1:length(fs)) { cat(paste("### ", fs[i] ,"\n","```r", "\n", sep="")) f <- get(fs[i],envir = test.env) print(f) cat(paste("\n", "```", "\n", sep="")) }
This report has been generated on r Sys.time()
.
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.