bfp: Bayesian Fractional Polynomials

Implements the Bayesian paradigm for fractional polynomial models under the assumption of normally distributed error terms.

AuthorDaniel Sabanes Bove <sabanesd@roche.com>
Date of publication2016-05-30 17:31:55
MaintainerDaniel Sabanes Bove <sabanesd@roche.com>
LicenseGPL (>= 2)
Version0.0-31

View on CRAN

Man pages

as.data.frame.BayesMfp: Convert a BayesMfp object to a data frame

BayesMfp: Bayesian model inference for multiple fractional polynomial...

BayesMfpMethods: Other methods for BayesMfp objects

bmaPredict: BMA prediction for new data points

BmaSamples: Bayesian model averaging over multiple fractional polynomial...

BmaSamplesMethods: Other methods for BmaSamples objects

constructNewdataMatrix: Construct the model matrix for new data based on an existing...

empiricalHpd: Construct an empirical HPD interval from samples

Extract.BayesMfp: Extract method for BayesMfp objects

findModel: Find a specific fractional polynomial model in a BayesMfp...

fpScale: Internal function for shifting and rescaling a fractional...

getDesignMatrix: Extract the design matrix of a multiple FP model.

getFpTransforms: Internal functions to handle FP transforms.

getLogMargLik: Extract log marginal likelihood from a model.

getLogPrior: Extract the log prior probability from a model.

getPosteriorParms: Extract updated posterior parameters for the normal inverse...

getPostExpectedgAndShrinkage: Extract posterior expected g and shrinkage factor (g/(1+g))...

inclusionProbs: Compute (model averaged) posterior variable inclusion...

invGamma: Functions for the inverse gamma distribution.

ozone: Ozone data from Breiman and Friedman, 1985

plotCurveEstimate: Generic function for plotting a fractional polynomial curve...

posteriors: Extract posterior model probability estimates from BayesMfp...

predict.BayesMfp: Predict method for BayesMfp objects

predict.BmaSamples: Predict method to extract point and interval predictions from...

rmvt: Multivariate Student Random Deviates

rshrinkage: Sample from the model-specific posterior of the shrinkage...

scrBesag: Simultaneous credible band computation (Besag algorithm)

scrHpd: Calculate an SCB from a samples matrix

summary.BayesMfp: Calculate and print the summary of a BayesMfp object

summary.BmaSamples: Calculate and print the summary of a BmaSamples object

transformMfp: Transform a fitted mfp model into a BayesMfp model

Functions

as.data.frame.BayesMfp Man page
BayesMfp Man page
[.BayesMfp Man page
BayesMfp Methods Man page
bfp Man page
bmaPredict Man page
BmaSamples Man page
BmaSamples Methods Man page
'\%bt\%' Man page
constructNewdataMatrix Man page
dinvGamma Man page
empiricalHpd Man page
Extract.BayesMfp Man page
findModel Man page
fitted.BayesMfp Man page
fitted.BmaSamples Man page
fpScale Man page
getDesignMatrix Man page
getFpTransforms Man page
getLogMargLik Man page
getLogPrior Man page
getPosteriorParms Man page
getPostExpectedg Man page
getPostExpectedShrinkage Man page
getTransformName Man page
inclusionProbs Man page
ozone Man page
pinvGamma Man page
plotCurveEstimate Man page
plotCurveEstimate.BayesMfp Man page
plotCurveEstimate.BmaSamples Man page
posteriors Man page
predict.BayesMfp Man page
predict.BmaSamples Man page
print.BayesMfp Man page
print.BmaSamples Man page
print.predict.BmaSamples Man page
print.summary.BayesMfp Man page
print.summary.BmaSamples Man page
qinvGamma Man page
residuals.BayesMfp Man page
residuals.BmaSamples Man page
rinvGamma Man page
rmvt Man page
rshrinkage Man page
scrBesag Man page
scrHpd Man page
summary.BayesMfp Man page
summary.BmaSamples Man page
transformMfp Man page
uc Man page

Files

bfp
bfp/inst
bfp/inst/examples
bfp/inst/examples/simulation.R
bfp/inst/CITATION
bfp/tests
bfp/tests/testSimulation.R
bfp/tests/shrinkage.R
bfp/tests/test.R
bfp/tests/dep.R
bfp/src
bfp/src/Makevars
bfp/src/hyperg.cpp
bfp/src/hyperg.h
bfp/src/const.c
bfp/src/RnewMat.h
bfp/src/RnewMat.cpp
bfp/src/scripts
bfp/src/scripts/SOURCES.mkf
bfp/src/conversions.h
bfp/src/mtherr.c
bfp/src/dataStructure.cpp
bfp/src/conversions.cpp
bfp/src/hyp2f1.c
bfp/src/sum.h
bfp/src/newmat
bfp/src/newmat/hholder.cpp
bfp/src/newmat/nm_misc.cpp
bfp/src/newmat/myexcept.h
bfp/src/newmat/newmatnl.h
bfp/src/newmat/Makefile
bfp/src/newmat/newmat1.cpp
bfp/src/newmat/newmatnl.cpp
bfp/src/newmat/newmatio.h
bfp/src/newmat/newmat9.cpp
bfp/src/newmat/newmat8.cpp
bfp/src/newmat/cholesky.cpp
bfp/src/newmat/newmat3.cpp
bfp/src/newmat/jacobi.cpp
bfp/src/newmat/newmatrm.h
bfp/src/newmat/newmat.h
bfp/src/newmat/myexcept.cpp
bfp/src/newmat/bandmat.cpp
bfp/src/newmat/evalue.cpp
bfp/src/newmat/precisio.h
bfp/src/newmat/newmat6.cpp
bfp/src/newmat/nm11.htm
bfp/src/newmat/newmatap.h
bfp/src/newmat/newmat5.cpp
bfp/src/newmat/newmatrm.cpp
bfp/src/newmat/newfft.cpp
bfp/src/newmat/newmat7.cpp
bfp/src/newmat/newmat2.cpp
bfp/src/newmat/sort.cpp
bfp/src/newmat/fft.cpp
bfp/src/newmat/controlw.h
bfp/src/newmat/submat.cpp
bfp/src/newmat/svd.cpp
bfp/src/newmat/include.h
bfp/src/newmat/newmatex.cpp
bfp/src/newmat/newmatrc.h
bfp/src/newmat/newmat4.cpp
bfp/src/bayesMfp.cpp
bfp/src/types.h
bfp/src/rcppExport.h
bfp/src/combinatorics.cpp
bfp/src/combinatorics.h
bfp/src/dataStructure.h
bfp/src/mconf.h
bfp/NAMESPACE
bfp/demo
bfp/demo/00Index
bfp/demo/ozone.R
bfp/data
bfp/data/ozone.RData
bfp/R
bfp/R/scrBesag.R bfp/R/plotCurveEstimate.R bfp/R/plotCurveEstimate.BmaSamples.R bfp/R/fpScale.R bfp/R/getFpTransforms.R bfp/R/BayesMfp.R bfp/R/BmaSamples.R bfp/R/getLogPrior.R bfp/R/getPosteriorParms.R bfp/R/constructNewdataMatrix.R bfp/R/summary.BayesMfp.R bfp/R/plotCurveEstimate.BayesMfp.R bfp/R/transformMfp.R bfp/R/scrHpd.R bfp/R/getPostExpectedgAndShrinkage.R bfp/R/findModel.R bfp/R/BmaSamplesMethods.R bfp/R/getDesignMatrix.R bfp/R/invGamma.R bfp/R/getLogMargLik.R bfp/R/BayesMfpMethods.R bfp/R/empiricalHpd.R bfp/R/posteriors.R bfp/R/inclusionProbs.R bfp/R/summary.BmaSamples.R bfp/R/bmaPredict.R bfp/R/rshrinkage.R bfp/R/rmvt.R
bfp/MD5
bfp/DESCRIPTION
bfp/ChangeLog
bfp/man
bfp/man/invGamma.Rd bfp/man/BmaSamples.Rd bfp/man/rshrinkage.Rd bfp/man/transformMfp.Rd bfp/man/predict.BmaSamples.Rd bfp/man/scrBesag.Rd bfp/man/Extract.BayesMfp.Rd bfp/man/getLogMargLik.Rd bfp/man/as.data.frame.BayesMfp.Rd bfp/man/constructNewdataMatrix.Rd bfp/man/rmvt.Rd bfp/man/scrHpd.Rd bfp/man/BayesMfp.Rd bfp/man/getDesignMatrix.Rd bfp/man/summary.BayesMfp.Rd bfp/man/fpScale.Rd bfp/man/predict.BayesMfp.Rd bfp/man/getPostExpectedgAndShrinkage.Rd bfp/man/empiricalHpd.Rd bfp/man/BmaSamplesMethods.Rd bfp/man/getPosteriorParms.Rd bfp/man/plotCurveEstimate.Rd bfp/man/getLogPrior.Rd bfp/man/inclusionProbs.Rd bfp/man/ozone.Rd bfp/man/BayesMfpMethods.Rd bfp/man/summary.BmaSamples.Rd bfp/man/bmaPredict.Rd bfp/man/getFpTransforms.Rd bfp/man/findModel.Rd bfp/man/posteriors.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.