get_sample_stats: Calculate biodiversity measures and summary statistics for a...
In biosampleR: Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation
View source: R/get_sample_stats.R
get_sample_stats R Documentation
Calculate biodiversity measures and summary statistics for a data set
using repeated sampling
Description
Calculate biodiversity measures and summary statistics for a data set
using repeated sampling
Usage
get_sample_stats(data, sites_col = 1, reps = 100, indices = "all")
Arguments
data
A data frame of count data,
with sites as rows and species as columns.
sites_col
The column number of column containing site IDs.
reps
The number of resamples to create.
indices
A vector of indices to calculate. Use "all" to calculate
all indices. Available indices are: abundance,
richness, shannon, simpson, chao1, and chao_diff.
Value
A list of two data frames. The first data frame contains site
specific data with sites as rows and summary statistics as columns.
The second contains an overall summary of the data.
Examples
stats <- get_sample_stats(BCI, reps = 5)
biosampleR documentation built on Sept. 14, 2023, 1:07 a.m.
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View source: R/get_sample_stats.R
| get_sample_stats | R Documentation |
Calculate biodiversity measures and summary statistics for a data set using repeated sampling
Description
Calculate biodiversity measures and summary statistics for a data set using repeated sampling
Usage
get_sample_stats(data, sites_col = 1, reps = 100, indices = "all")
Arguments
data |
A data frame of count data, with sites as rows and species as columns. |
sites_col |
The column number of column containing site IDs. |
reps |
The number of resamples to create. |
indices |
A vector of indices to calculate. Use "all" to calculate all indices. Available indices are: abundance, richness, shannon, simpson, chao1, and chao_diff. |
Value
A list of two data frames. The first data frame contains site specific data with sites as rows and summary statistics as columns. The second contains an overall summary of the data.
Examples
stats <- get_sample_stats(BCI, reps = 5)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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