Man pages for birp
Testing for Population Trends Using Low-Cost Ecological Count Data
| assess_NB | Assess whether a Poisson model can replace the Negative... |
| birp | Create a 'birp' Object |
| birp_data | Create a birp_data Object from Count and Effort Matrices |
| birp_data_from_data_frame | Create a 'birp_data' Object from a Data Frame or List of Data... |
| birp_data_from_file | Create a birp_data Object from File(s) |
| birp_from_command_line | Create a birp Object from Command-Line Output Files |
| birp-package | Testing for Population Trends Using Low-Cost Ecological Count... |
| dot-addLegendMultiGamma.birp | Function to add legend to plot denoting gammas |
| dot-addTextSingleGammaDelta.birp | Function to add text box to plot denoting P(gamma > 0 | n) or... |
| dot-addToList.birp | Function to convert an argument to a string and add it to a... |
| dot-calculatePsi.birp | Compute step-change indicator matrix for Delta |
| dot-calculateRho.birp | Function to calculate rho |
| dot-checkFile.birp | Function to check if a file exists and generate error message... |
| dot-createObjBirp.birp | Function to create an object of type birp |
| dot-getDataAllMethods.birp_data | This function reads data for all methods into a list |
| dot-getEpochStarts.birp | Function to get the start of each epoch, including for a... |
| dot-getLabelGamma.birp | Function to generate a nice axis label with greek gamma and... |
| dot-openFile.birp | Function to open a file and generate error message if it was... |
| dot-openPosteriorPlot.birp | Function to open an empty plot for plotting the posterior... |
| dot-parsePosteriorGammaDelta.birp | Function to parse posterior results of gamma and Delta |
| dot-plotShadingPolygon.birp | Function to add a hatched polygon to a plot |
| dot-printPostSummary.birp | Function to print posterior summaries |
| dot-validate.birp_data | This function check if a birp_data object is valid |
| plot.birp | Plot posterior distributions of rate and/or step change... |
| plot.birp_data | Plot a birp_data Object |
| plot_epoch_pair | Plot joint posterior of two gamma parameters |
| plot_mcmc | Plot MCMC Traces and Posterior Densities |
| plot_trend | Plot Posterior Trend Estimates |
| print.birp | Print a birp object |
| print.birp_data | Print a birp_data object Prints a summary of a 'birp_data'... |
| prob_step | Posterior probability of a step change |
| prob_trend | Posterior probability of a population trend |
| prob_trend_diff | Pairwise posterior comparisons of population trends |
| simulate_birp | Simulate Data for BIRP Models Generates simulated count data... |
| simulate_birp_from_results | This function simulates a birp_data object using all... |
| summary.birp | Summary method for birp objects |
| summary.birp_data | Summarize a birp_data object |
