EcoEDGE: EcoEDGE: Ecologically and Evolutionarily Distinct and...

In bivariatemaps: Creates Bivariate Maps

EcoEDGE: Ecologically and Evolutionarily Distinct and Globally Endangered

Description

Calculates ED, EcoD, EDGE, EcoDGE, and EcoEDGE, from Red List Categories, a phylogenetic tree, and a functional dendrogram.

Usage

EcoEDGE(
  category,
  phylo,
  func,
  funcweight = 0.5,
  phyloweight = 0.5,
  polytomy = "isaac"
)

Arguments

category	data frame where the first column contains the red list categories of species.
phylo	phylogenetic tree of species.
func	functional dendrogram of species.
funcweight	weight of ecological distinctiveness on the calculation of EcoEDGE scores.
phyloweight	weight of evolutionary distinctiveness on the calculation of EcoEDGE scores. Sum of funcweight and phyloweight must be equal to 1.
polytomy	how to handle polytomies in the phylogeny and the functional dendrogram. See "ed.calc" function for details.

Value

A table with calculated values for each variable.

Examples

# https://rfunctions.blogspot.com/2021/03/ecoedge-ecologically-and-evolutionarily.html

bivariatemaps documentation built on Oct. 5, 2024, 1:07 a.m.