blme: Bayesian Linear Mixed-Effects Models
Version 1.0-4

Maximum a posteriori estimation for linear and generalized linear mixed-effects models in a Bayesian setting. Extends 'lme4' by Douglas Bates, Martin Maechler, Ben Bolker, and Steve Walker.

AuthorVincent Dorie <vjd4@nyu.edu>
Date of publication2015-06-14 01:21:14
MaintainerVincent Dorie <vjd4@nyu.edu>
LicenseGPL (>= 2)
Version1.0-4
URL https://github.com/vdorie/blme
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("blme")

Getting started

README.md

Popular man pages

blmer: Fit Bayesian Linear and Generalized Linear Mixed-Effects...
bmerDist-class: Bayesian Linear Mixed-Effects Model Prior Representations and...
bmerMod-class: Class "bmerMod" of Fitted Mixed-Effect Models
See all...

All man pages Function index File listing

Man pages

blmer: Fit Bayesian Linear and Generalized Linear Mixed-Effects...
bmerDist-class: Bayesian Linear Mixed-Effects Model Prior Representations and...
bmerMod-class: Class "bmerMod" of Fitted Mixed-Effect Models

Functions

anyPriorsApplied Source code
bglmer Man page Source code
bglmerMod-class Man page
blmer Man page Source code
blmerMod-class Man page
bmerDist Man page
bmerDist-class Man page
bmerMod Man page
bmerMod-class Man page
calculateFixefExponentialTerm Source code
calculatePriorExponentialTerms Source code
calculatePriorPolynomialTerm Source code
covariancePriorsToString Source code
createBlmerControl Source code
deparseCommonScale Source code
evaluateCovPriors Source code
evaluateFixefPrior Source code
evaluatePriorArguments Source code
evaluateResidualPrior Source code
expandParsInCurrentFrame Source code
extractParameterListFromFit Source code
getBglmerDevianceFunctionBody Source code
getBlmerDevianceFunctionBody Source code
getCovBlocks Source code
getFixefOptimizationType Source code
getLowerBounds Source code
getParInfo Source code
getRanefStructure Source code
getResidPriorDFAdjustment Source code
getSigmaOptimizationType Source code
getSigmaProfiler Source code
getStartingValues Source code
getThetaLowerBoundsForDimension Source code
is.formula Source code
lmmObjective Source code
makeRefitDevFun Source code
mkBglmerDevfun Source code
mkBlmerDevfun Source code
namedList Source code
optimizeLmer Source code
parsePrior Source code
print,bmerDist-method Man page
print.bmerMod Man page Source code
print.summary.bmerMod Man page
printBmerenv Source code
printPriors Source code
refit.bmerMod Source code
repackageMerMod Source code
residualVarianceGammaPrior Source code
residualVarianceInvGammaPrior Source code
setPrior Source code
show,bmerDist-method Man page
show,bmerMod-method Man page
show.bmerMod Man page
summary.bmerMod Man page Source code
summary.summary.bmerMod Man page Source code
testGetBglmerDevianceFunctionBody Source code
toString.bmerCustomDist Source code
toString.bmerGammaDist Source code
toString.bmerInvGammaDist Source code
toString.bmerInvWishartDist Source code
toString.bmerNormalDist Source code
toString.bmerPointDist Source code
toString.bmerTDist Source code
toString.bmerWishartDist Source code
updateBglmerDevfun Source code
validateRegressionArgument Source code
vcov.summary.bmerMod Man page Source code

Files

inst
inst/CITATION
inst/common
inst/common/lmmData.R
inst/common/glmmData.R
inst/common/checkWarning.R
ToDo
tests
tests/testthat
tests/testthat/test-04-fixef_errors.R
tests/testthat/test-10-refit.R
tests/testthat/test-05-covariance_errors.R
tests/testthat/test-08-lmm_covariance.R
tests/testthat/test-07-lmm_fixef.R
tests/testthat/test-01-lmm.R
tests/testthat/test-09-glmm_priors.R
tests/testthat/test-03-resid_errors.R
tests/testthat/test-06-lmm_resid.R
tests/testthat/test-02-glmm.R
tests/test-all.R
NAMESPACE
R
R/string.R
R/dist_wishart.R
R/priorEval.R
R/devFun.R
R/dist_custom.R
R/dist_normal.R
R/AllClass.R
R/control.R
R/blmer.R
R/generics.R
R/dist_t.R
R/dist_gamma.R
R/optimize.R
R/dist_point.R
R/dist.R
R/util.R
R/parameters.R
README.md
MD5
DESCRIPTION
ChangeLog
man
man/bmerMod-class.Rd
man/bmerDist-class.Rd
man/blmer.Rd
blme documentation built on May 19, 2017, 11:33 p.m.