bnnSurvival: Bagged k-Nearest Neighbors Survival Prediction
Version 0.1.5

Implements a bootstrap aggregated (bagged) version of the k-nearest neighbors survival probability prediction method (Lowsky et al. 2013). In addition to the bootstrapping of training samples, the features can be subsampled in each baselearner to break the correlation between them. The Rcpp package is used to speed up the computation.

AuthorMarvin N. Wright
Date of publication2017-05-10 15:37:49 UTC
MaintainerMarvin N. Wright <marv@wrig.de>
LicenseGPL-3
Version0.1.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("bnnSurvival")

Popular man pages

bnnSurvival: Bagged k-nearest neighbors survival prediction
get_best_k: Get optimal number of neighbors
predict-bnnSurvivalBaseLearner-method: Compute prediction for all samples.
predict-bnnSurvivalEnsemble-method: Predict survival probabilities with bagged k-nearest...
predictions-bnnSurvivalResult-method: Get Predictions
print-bnnSurvivalResult-method: Generic print method for bnnSurvivalResult
timepoints: Get Timepoints
See all...

All man pages Function index File listing

Man pages

bnnSurvival: Bagged k-nearest neighbors survival prediction
get_best_k: Get optimal number of neighbors
predict-bnnSurvivalBaseLearner-method: Compute prediction for all samples.
predict-bnnSurvivalEnsemble-method: Predict survival probabilities with bagged k-nearest...
predictions: Get Predictions
predictions-bnnSurvivalResult-method: Get Predictions
predictSurvProb.bnnSurvivalEnsemble: Function to extract survival probability predictions from...
print-bnnSurvivalEnsemble-method: Generic print method for bnnSurvivalEnsemble
print-bnnSurvivalResult-method: Generic print method for bnnSurvivalResult
show-bnnSurvivalEnsemble-method: Generic show method for bnnSurvivalEnsemble
show-bnnSurvivalResult-method: Generic show method for bnnSurvivalResult
timepoints: Get Timepoints
timepoints-bnnSurvivalResult-method: Get timepoints

Functions

bnnSurvival Man page Source code
bnnSurvivalBaseLearner Source code
bnnSurvivalEnsemble Source code
bnnSurvivalPredictions Source code
bnnSurvivalResult Source code
get_best_k Man page Source code
predict,bnnSurvivalBaseLearner-method Man page
predict,bnnSurvivalEnsemble-method Man page
predictSurvProb.bnnSurvivalEnsemble Man page Source code
predictions Man page
predictions,bnnSurvivalResult-method Man page
print,bnnSurvivalEnsemble-method Man page
print,bnnSurvivalResult-method Man page
show,bnnSurvivalEnsemble-method Man page
show,bnnSurvivalResult-method Man page
timepoints Man page
timepoints,bnnSurvivalResult-method Man page
weighted_kaplan_meier Source code

Files

tests
tests/testthat.R
tests/testthat
tests/testthat/test_kaplan_meier.R
tests/testthat/test_pec.R
tests/testthat/test_bnnSurvival.R
src
src/weighted_kaplan_meier.cpp
src/bnnSurvival_init.c
src/RcppExports.cpp
NAMESPACE
R
R/bnnSurvivalResult.R
R/all_generics.R
R/bnnSurvivalBaseLearner.R
R/utility.R
R/bnnSurvivalEnsemble.R
R/RcppExports.R
R/bnnSurvivalPredictions.R
R/bnnSurvival.R
MD5
DESCRIPTION
man
man/bnnSurvival.Rd
man/timepoints-bnnSurvivalResult-method.Rd
man/show-bnnSurvivalEnsemble-method.Rd
man/show-bnnSurvivalResult-method.Rd
man/get_best_k.Rd
man/predictSurvProb.bnnSurvivalEnsemble.Rd
man/predict-bnnSurvivalBaseLearner-method.Rd
man/print-bnnSurvivalResult-method.Rd
man/timepoints.Rd
man/predict-bnnSurvivalEnsemble-method.Rd
man/predictions.Rd
man/predictions-bnnSurvivalResult-method.Rd
man/print-bnnSurvivalEnsemble-method.Rd
bnnSurvival documentation built on May 19, 2017, 11:07 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.