Implements a bootstrap aggregated (bagged) version of the k-nearest neighbors survival probability prediction method (Lowsky et al. 2013). In addition to the bootstrapping of training samples, the features can be subsampled in each baselearner to break the correlation between them. The Rcpp package is used to speed up the computation.

Author | Marvin N. Wright |

Date of publication | 2016-02-27 14:40:34 |

Maintainer | Marvin N. Wright <wright@imbs.uni-luebeck.de> |

License | GPL-3 |

Version | 0.1.4 |

**bnnSurvival:** Bagged k-nearest neighbors survival prediction

**get_best_k:** Get optimal number of neighbors

**predict-bnnSurvivalBaseLearner-method:** Compute prediction for all samples.

**predict-bnnSurvivalEnsemble-method:** Predict survival probabilities with bagged k-nearest...

**predictions:** Get Predictions

**predictions-bnnSurvivalResult-method:** Get Predictions

**predictSurvProb.bnnSurvivalEnsemble:** Function to extract survival probability predictions from...

**print-bnnSurvivalEnsemble-method:** Generic print method for bnnSurvivalEnsemble

**print-bnnSurvivalResult-method:** Generic print method for bnnSurvivalResult

**show-bnnSurvivalEnsemble-method:** Generic show method for bnnSurvivalEnsemble

**show-bnnSurvivalResult-method:** Generic show method for bnnSurvivalResult

**timepoints:** Get Timepoints

**timepoints-bnnSurvivalResult-method:** Get timepoints

bnnSurvival

bnnSurvival/tests

bnnSurvival/tests/testthat.R

bnnSurvival/tests/testthat

bnnSurvival/tests/testthat/test_kaplan_meier.R

bnnSurvival/tests/testthat/test_pec.R

bnnSurvival/tests/testthat/test_bnnSurvival.R

bnnSurvival/src

bnnSurvival/src/weighted_kaplan_meier.cpp

bnnSurvival/src/RcppExports.cpp

bnnSurvival/NAMESPACE

bnnSurvival/R

bnnSurvival/R/bnnSurvivalResult.R
bnnSurvival/R/all_generics.R
bnnSurvival/R/bnnSurvivalBaseLearner.R
bnnSurvival/R/utility.R
bnnSurvival/R/bnnSurvivalEnsemble.R
bnnSurvival/R/RcppExports.R
bnnSurvival/R/bnnSurvivalPredictions.R
bnnSurvival/R/bnnSurvival.R
bnnSurvival/MD5

bnnSurvival/DESCRIPTION

bnnSurvival/man

bnnSurvival/man/bnnSurvival.Rd
bnnSurvival/man/timepoints-bnnSurvivalResult-method.Rd
bnnSurvival/man/show-bnnSurvivalEnsemble-method.Rd
bnnSurvival/man/show-bnnSurvivalResult-method.Rd
bnnSurvival/man/get_best_k.Rd
bnnSurvival/man/predictSurvProb.bnnSurvivalEnsemble.Rd
bnnSurvival/man/predict-bnnSurvivalBaseLearner-method.Rd
bnnSurvival/man/print-bnnSurvivalResult-method.Rd
bnnSurvival/man/timepoints.Rd
bnnSurvival/man/predict-bnnSurvivalEnsemble-method.Rd
bnnSurvival/man/predictions.Rd
bnnSurvival/man/predictions-bnnSurvivalResult-method.Rd
bnnSurvival/man/print-bnnSurvivalEnsemble-method.Rd
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