bold: Interface to Bold Systems 'API'

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A programmatic interface to the Web Service methods provided by Bold Systems for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.

Author
Scott Chamberlain [aut, cre]
Date of publication
2016-03-29 10:48:27
Maintainer
Scott Chamberlain <myrmecocystus@gmail.com>
License
MIT + file LICENSE
Version
0.3.5
URLs

View on CRAN

Man pages

bold_identify
Search for matches to sequences against the BOLD COI...
bold-package
bold: A programmatic interface to the Barcode of Life data.
bold_seq
Search BOLD for sequences.
bold_seqspec
Get BOLD specimen + sequence data.
bold_specimens
Search BOLD for specimens.
bold_tax_id
Search BOLD for taxonomy data by BOLD ID.
bold_tax_name
Search BOLD for taxonomy data by taxonomic name.
bold_trace
Get BOLD trace files
sequences
List of 3 nucleotide sequences to use in examples for the...

Files in this package

bold
bold/inst
bold/inst/doc
bold/inst/doc/bold_vignette.html
bold/inst/doc/bold_vignette.Rmd
bold/tests
bold/tests/testthat
bold/tests/testthat/test-bold_tax_id.R
bold/tests/testthat/test-bold_tax_name.R
bold/tests/testthat/test-bold_specimens.R
bold/tests/testthat/test-bold_seq.R
bold/tests/testthat/test-bold_seqspec.R
bold/tests/testthat/test-bold_identify.R
bold/tests/test-all.R
bold/NAMESPACE
bold/NEWS.md
bold/data
bold/data/sequences.RData
bold/R
bold/R/bold-package.R
bold/R/bold_specimens.R
bold/R/bold_identify.R
bold/R/bold_trace.R
bold/R/bold_tax_id.R
bold/R/bold_seqspec.R
bold/R/bold_tax_name.R
bold/R/zzz.R
bold/R/bold_seq.R
bold/vignettes
bold/vignettes/bold_vignette.Rmd
bold/README.md
bold/MD5
bold/build
bold/build/vignette.rds
bold/DESCRIPTION
bold/man
bold/man/bold_tax_name.Rd
bold/man/bold_seq.Rd
bold/man/sequences.Rd
bold/man/bold_tax_id.Rd
bold/man/bold-package.Rd
bold/man/bold_trace.Rd
bold/man/bold_specimens.Rd
bold/man/bold_seqspec.Rd
bold/man/bold_identify.Rd
bold/LICENSE