Man pages for boral
Bayesian Ordination and Regression AnaLysis
| about.distributions | Distributions available in boral |
| about.lvs | Correlation structure for latent variables |
| about.ranefs | Including response-specific random intercepts in boral |
| about.ssvs | Stochastic search variable selection (SSVS) in boral |
| about.traits | Including species traits in boral |
| boral | Fitting boral (Bayesian Ordination and Regression AnaLysis)... |
| boral-package | Bayesian Ordination and Regression AnaLysis (boral) |
| calc.condlogLik | Conditional log-likelihood for a fitted model |
| calc.logLik.lv0 | Log-likelihood for a model fitted with no latent variables |
| calc.marglogLik | Marginal log-likelihood for a fitted model |
| calc.varpart | Variance partitioning for a latent variable model |
| coefsplot | Caterpillar plots of the regression coefficients from a... |
| create.life | \Sexpr[results=rd, stage=render]{lifecycle::badge("stable")}... |
| ds.residuals | Dunn-Smyth Residuals for a fitted model |
| fitted.boral | Extract Model Fitted Values for an boral object |
| get.dic | Extract Deviance Information Criterion for a fitted model |
| get.enviro.cor | Extract covariances and correlations due to shared... |
| get.hpdintervals | Highest posterior density intervals for a fitted model |
| get.mcmcsamples | Extract MCMC samples from models |
| get.measures | Information Criteria for models |
| get.more.measures | Additional Information Criteria for models |
| get.residual.cor | Extract residual correlations and precisions from models |
| lvsplot | Plot the latent variables from a fitted model |
| make.jagsboralmodel | Write a text file containing a model for use into JAGS |
| make.jagsboralnullmodel | Write a text file containing a model for use into JAGS |
| plot.boral | Plots of a fitted boral object |
| predict.boral | Predict using a model |
| ranefsplot | Caterpillar plots of response-specific random effects from a... |
| summary.boral | Summary of fitted boral object |
| tidyboral | Reformats output from a boral fit |
