Bayesian Ordination and Regression AnaLysis

about.distributions | Distributions available in boral |

about.lvs | Correlation structure for latent variables |

about.ssvs | Stochastic search variable selection (SSVS) in boral |

about.traits | Including species traits in boral |

boral | Fitting boral (Bayesian Ordination and Regression AnaLysis)... |

boral-package | Bayesian Ordination and Regression AnaLysis (boral) |

calc.condlogLik | Conditional log-likelihood for a boral model |

calc.logLik.lv0 | Log-likelihood for a boral model with no latent variables |

calc.marglogLik | Marginal log-likelihood for an boral model |

calc.varpart | Variance partitioning for a boral model |

coefsplot | Caterpillar plots of the regression coefficients from a boral... |

create.life | Simulate a Multivariate Response Matrix |

ds.residuals | Dunn-Smyth Residuals for a boral model |

fitted.boral | Extract Model Fitted Values for an boral object |

get.dic | Extract Deviance Information Criterion for boral model |

get.enviro.cor | Extract covariances and correlations due to shared... |

get.hpdintervals | Highest posterior density intervals for an boral model |

get.mcmcsamples | Extract MCMC samples from boral models |

get.measures | Information Criteria for boral models |

get.more.measures | Additional Information Criteria for boral models |

get.residual.cor | Extract residual correlations and precisions from boral... |

lvsplot | Plot the latent variables from an boral model |

make.jagsboralmodel | Write a text file containing an boral model for use into JAGS |

make.jagsboralnullmodel | Write a text file containing an boral model for use into JAGS |

plot.boral | Plots of a fitted boral object |

predict.boral | Predict using a boral model |

summary.boral | Summary of fitted boral object |

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