brranching: Fetch 'Phylogenies' from Many Sources

Includes methods for fetching 'phylogenies' from a variety of sources, currently includes 'Phylomatic' (<http://phylodiversity.net/phylomatic>), with more in the future.

Author
Scott Chamberlain [aut, cre]
Date of publication
2016-04-14 08:32:43
Maintainer
Scott Chamberlain <myrmecocystus@gmail.com>
License
MIT + file LICENSE
Version
0.2.0
URLs

View on CRAN

Man pages

brranching-package
Phylogenies from many sources
phylomatic
Query Phylomatic for a phylogenetic tree.
phylomatic_local
Use Phylomatic locally - ideal for large queries
phylomatic_names
Phylomatic names
tpl
Lookup-table for family, genus, and species names for...

Files in this package

brranching
brranching/inst
brranching/inst/ignore
brranching/inst/ignore/tolweb.R
brranching/inst/ignore/tol.R
brranching/inst/ignore/phylomedb.R
brranching/tests
brranching/tests/testthat
brranching/tests/testthat/test-phylomatic_names.R
brranching/tests/testthat/test-phylomatic.R
brranching/tests/test-all.R
brranching/NAMESPACE
brranching/NEWS.md
brranching/data
brranching/data/tpl.RData
brranching/R
brranching/R/phylomatic_local.R
brranching/R/phylomatic_names.R
brranching/R/helpers.R
brranching/R/brranching-package.R
brranching/R/phylomatic.R
brranching/R/globals.R
brranching/R/zzz.R
brranching/README.md
brranching/MD5
brranching/DESCRIPTION
brranching/man
brranching/man/phylomatic_names.Rd
brranching/man/brranching-package.Rd
brranching/man/phylomatic_local.Rd
brranching/man/phylomatic.Rd
brranching/man/tpl.Rd
brranching/LICENSE