c3net: Infering large-scale gene networks with C3NET
Version 1.1.1

This package allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.

AuthorGokmen Altay, Frank Emmert-Streib
Date of publication2012-07-23 10:35:32
MaintainerGokmen Altay <altayscience@gmail.com>
LicenseGPL (>= 3)
Version1.1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("c3net")

Popular man pages

c3: C3NET second step: Selecting maximum valued elements
c3net: All in one function to infer network with C3NET
copula: Copula transformation of data set
expdata: Example data set
makemim: Constructing mutual information matrix
netplot: Plotting the inferred network
truenet: Reference, e.g. true, network of the example data set
See all...

All man pages Function index File listing

Man pages

c3: C3NET second step: Selecting maximum valued elements
c3net: All in one function to infer network with C3NET
checknet: Validating the inferred network
copula: Copula transformation of data set
expdata: Example data set
makemim: Constructing mutual information matrix
netplot: Plotting the inferred network
sigtestMTC: Elimination of nonsignificant edges by application of a...
sigtestp: Significance test for elimination of nonsignificant edges
truenet: Reference, e.g. true, network of the example data set

Functions

Files

MD5
README
R
R/sigtestp.R
R/copula.R
R/netplot.R
R/c3net.R
R/makemim.R
R/c3.R
R/checknet.R
R/sigtestMTC.R
man
man/copula.Rd
man/expdata.Rd
man/sigtestMTC.Rd
man/makemim.Rd
man/truenet.Rd
man/c3.Rd
man/c3net.Rd
man/netplot.Rd
man/checknet.Rd
man/sigtestp.Rd
NAMESPACE
DESCRIPTION
inst
inst/CITATION
inst/doc
inst/doc/README.txt
inst/doc/EXAMPLE.txt
inst/doc/c3net-manual.pdf
data
data/truenet.rda
data/expdata.rda
c3net documentation built on May 19, 2017, 4:22 p.m.

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