calibrar: Automated Parameter Estimation for Complex (Ecological) Models

Automated parameter estimation for complex (ecological) models in R. This package allows the parameter estimation or calibration of complex models, including stochastic ones. It is a generic tool that can be used for fitting any type of models, especially those with non-differentiable objective functions. It supports multiple phases and constrained optimization. It implements maximum likelihood estimation methods and automated construction of the objective function from simulated model outputs. See <http://roliveros-ramos.github.io/calibrar> for more details.

Author
Ricardo Oliveros-Ramos [aut, cre]
Date of publication
2016-02-17 13:43:47
Maintainer
Ricardo Oliveros-Ramos <ricardo.oliveros@gmail.com>
License
GPL-2
Version
0.2.0
URLs

View on CRAN

Man pages

calibrarDemo
Demos for the calibrar package
calibrar-package
Automated Calibration for Complex (Ecological) Models
calibrate
Sequential parameter estimation for the calibration of models
createObjectiveFunction
Create an objective function to be used with optimization...
getCalibrationInfo
Get information to run a calibration using the 'calibrar'...
getObservedData
Get observed data for the calibration of a model
optimES
Optimization using Evolutionary Strategies
SphereN
Sphere function with random noise

Files in this package

calibrar
calibrar/inst
calibrar/inst/CITATION
calibrar/NAMESPACE
calibrar/R
calibrar/R/calibrar-demoPoisson.R
calibrar/R/aaa-.R
calibrar/R/calibrar-random.R
calibrar/R/calibrar-fitness.R
calibrar/R/calibrar-demoLV.R
calibrar/R/calibrar-internal.R
calibrar/R/calibrar-class.R
calibrar/R/calibrar-auxiliar.R
calibrar/R/calibrar-test_functions.R
calibrar/R/calibrar-restart.R
calibrar/R/calibrar-optimWrapper.R
calibrar/R/calibrar-fitness_aux.R
calibrar/R/calibraR-main.R
calibrar/R/calibrar-AHR_ES.R
calibrar/README.md
calibrar/MD5
calibrar/DESCRIPTION
calibrar/man
calibrar/man/calibrar-package.Rd
calibrar/man/calibrarDemo.Rd
calibrar/man/SphereN.Rd
calibrar/man/createObjectiveFunction.Rd
calibrar/man/getObservedData.Rd
calibrar/man/getCalibrationInfo.Rd
calibrar/man/optimES.Rd
calibrar/man/calibrate.Rd