API for calibrar
Automated Parameter Estimation for Complex Models
| Global functions | |
|---|---|
| .DE | Source code |
| .N_stop | Source code |
| .PoissonMixedModel | Source code |
| .PredatorPreyModel | Source code |
| .Rcgmin | Source code |
| .Rvmmin | Source code |
| .SIRModel | Source code |
| .ahres | Source code |
| .all_methods | Source code |
| .batchsize | Source code |
| .bobyqa | Source code |
| .calculateFitness | Source code |
| .calculateObjetiveValue | Source code |
| .calculateOptimalWeights | Source code |
| .calculateRange | Source code |
| .calculateSigma | Source code |
| .checkActive | Source code |
| .checkBounds | Source code |
| .checkControl_calibrate | Source code |
| .checkConvergence | Source code |
| .checkFnscale | Source code |
| .checkOpt | Source code |
| .checkParscale | Source code |
| .checkPhases | Source code |
| .checkReplicates | Source code |
| .check_arg_length | Source code |
| .check_control_ahres | Source code |
| .cmaes | Source code |
| .continueEvolution | Source code |
| .copyMaster | Source code |
| .createOutputFile | Source code |
| .createPopulation | Source code |
| .createRandomPopulation | Source code |
| .createRestartFile | Source code |
| .dfoptim | Source code |
| .errorReadingCsv | Source code |
| .fitness | Source code |
| .genSA | Source code |
| .generateIBMLotkaVolterra | Source code |
| .generatePoissonMixedModel | Source code |
| .generatePredatorPreyModel | Source code |
| .generateSIRModel | Source code |
| .genoud | Source code |
| .getRecombinationWeights | Source code |
| .getRestart | Source code |
| .getResults | Source code |
| .getWorkDir | Source code Source code |
| .get_command_argument | Man page Source code |
| .get_guess_LV | Source code |
| .get_h | Source code |
| .globalFitness | Source code |
| .grad_central | Source code |
| .grad_richardson | Source code |
| .grad_simple | Source code |
| .guessType | Source code |
| .guess_type | Source code |
| .head | Source code |
| .hjn | Source code |
| .lbfgsb3 | Source code |
| .logit | Source code |
| .messageByGen | Source code |
| .myRowMean | Source code |
| .mycbind | Source code |
| .mylength | Source code |
| .newOpt | Source code |
| .nlm | Source code |
| .nlminb | Source code |
| .norma | Source code |
| .optPopSize | Source code |
| .optim | Source code |
| .optim2 | Source code |
| .pasteList | Source code |
| .printSeq | Source code |
| .pso | Source code |
| .rbind_fitness | Source code |
| .read.csv3 | Source code |
| .read.csv4 | Source code |
| .read_configuration | Man page Source code |
| .read_data | Source code |
| .restartCalibration | Source code |
| .rnorm | Source code |
| .rnorm2 | Source code |
| .roundmaxpop | Source code |
| .rtnorm | Source code |
| .rtnorm2 | Source code |
| .selection | Source code |
| .setNewCalibration | Source code |
| .setWorkDir | Source code |
| .smooth_stop2 | Source code |
| .smooth_stop3 | Source code |
| .smooth_stop4 | Source code |
| .smooth_stop_old | Source code |
| .soma | Source code |
| .spg | Source code |
| .summaryCalibrarResults | Source code |
| .tail | Source code |
| .the_stop | Source code |
| .trim_trace_ahr | Source code |
| .updateControl | Source code |
| .updatePopulation | Source code |
| .w.oi | Source code |
| .weighted.sum | Source code |
| .write_calibrar_dump | Source code |
| Rvmmin | Source code |
| Rvmminb | Source code |
| Rvmminu | Source code |
| ahres | Man page Source code |
| calibrar | Man page |
| calibrar-defunct | Man page |
| calibrar-package | Man page |
| calibrarDemo | Source code |
| calibrar_demo | Man page Source code |
| calibrate | Man page Source code |
| calibrate.TMB | Source code |
| calibrate.default | Man page Source code |
| calibration_data | Man page Source code |
| calibration_objFn | Man page Source code |
| calibration_setup | Man page Source code |
| check_control | Source code |
| coef.ahres.result | Source code |
| coef.calibrar.results | Source code |
| copy_master_folder | Source code |
| createObjectiveFunction | Man page Source code |
| createObjectiveFunction-defunct | Man page |
| dim.calibrar.results | Source code |
| dmvnorm | Source code |
| fitness | Man page |
| format_difftime | Source code |
| gaussian_kernel | Man page Source code |
| getCalibrationInfo | Man page Source code |
| getCalibrationInfo-defunct | Man page |
| getObservedData | Man page Source code |
| getObservedData-defunct | Man page |
| get_guess_LV | Source code |
| gradient | Man page Source code |
| gradient.default | Source code |
| lnorm2 | Source code |
| lnorm3 | Source code |
| lnorm4 | Source code |
| lnorm4b | Source code |
| make_number | Source code |
| multinom | Source code |
| norm2 | Source code |
| normp | Source code |
| objFn | Man page Source code |
| optim2 | Man page Source code |
| optimh | Man page Source code |
| penalty | Source code |
| plot.ahres.result | Source code |
| plot.calibrar.results | Source code |
| plot.spline.par | Source code |
| pois | Source code |
| predict.calibrar.results | Source code |
| print.ahres.result | Source code |
| print.calibrar.demo | Source code |
| print.calibrar.results | Source code |
| print.summary.ahres.result | Source code |
| print.summary.calibrar.results | Source code |
| rangeq | Source code |
| rtnorm2 | Source code |
| smooth_stop | Source code |
| sphereN | Man page Source code |
| spline_par | Man page Source code |
| summary.ahres.result | Source code |
| summary.calibrar.function | Source code |
| summary.calibrar.results | Man page Source code |
| the_stop | Source code |
