calmr_model_graph: Create a graph with calmr data

In calmr: Canonical Associative Learning Models and their Representations

Create a graph with calmr data

Description

patch_graphs() patches graphs with 'patchwork'

Usage

calmr_model_graph(
  x,
  loops = TRUE,
  limits = max(abs(x$value)) * c(-1, 1),
  colour_key = FALSE,
  t = max(x$trial),
  options = get_graph_opts()
)

patch_graphs(graphs, selection = names(graphs))

get_graph_opts(graph_size = "small")

Arguments

x	A data.frame-like with data to use in the plot. Contains a column named value.
loops	Logical. Whether to draw arrows back and forth
limits	Numerical. Limits for color scale. Defaults to max(abs(x$value))*c(-1,1).
colour_key	Logical. Whether to show the color key
t	The trial from which weights are obtained (defaults to the maximum trial in the data).
options	A list with graph options, as returned by get_graph_opts().
graphs	A list of (named) graphs, as returned by graph() or calmr_model_graph()
selection	A character or numeric vector determining the plots to patch.
graph_size	A string (either "small" or "large"). to return default values for small or large graphs
trial	Numerical. The trial to graph.

Value

A 'ggplot' object

patch_graphs() returns a 'patchwork' object

A list with graph options, to be passed to ggnetwork::geom_nodes().

Note

You should probably be getting graphs via the graph method for CalmrExperiment.

calmr documentation built on June 8, 2025, 1:03 p.m.