tests/testthat/_snaps/ard_stack_hierarchical.md

In cards: Analysis Results Data

ard_stack_hierarchical(variables) messaging removed obs

Code
  ard <- ard_stack_hierarchical(dplyr::mutate(ADAE_small, AESOC = ifelse(dplyr::row_number() ==
    1L, NA, AESOC)), variables = c(AESOC, AEDECOD), id = USUBJID, denominator = dplyr::rename(
    ADSL, TRTA = TRT01A))
Message
  * Removing 1 row from `data` with NA or NaN values in "AESOC" and "AEDECOD" columns.

Code
  ard <- ard_stack_hierarchical(ADAE_small, variables = c(AESOC, AEDECOD), id = USUBJID,
  by = TRTA, denominator = dplyr::mutate(dplyr::rename(ADSL, TRTA = TRT01A),
  TRTA = ifelse(dplyr::row_number() == 1L, NA, TRTA)))
Message
  * Removing 1 row from `denominator` with NA or NaN values in "TRTA" column.

ard_stack_hierarchical(variables) messaging

Code
  ard_stack_hierarchical(ADAE_small, variables = starts_with("xxxxx"), id = USUBJID,
  denominator = dplyr::rename(ADSL, TRTA = TRT01A))
Condition
  Error in `ard_stack_hierarchical()`:
  ! Arguments `variables` and `include` cannot be empty.

Code
  ard_stack_hierarchical(ADAE_small, variables = c(AESOC, AEDECOD), id = starts_with(
    "xxxxx"), denominator = dplyr::rename(ADSL, TRTA = TRT01A))
Condition
  Error in `ard_stack_hierarchical()`:
  ! Argument `id` cannot be empty.

ard_stack_hierarchical(by) messaging

Code
  ard <- ard_stack_hierarchical(dplyr::mutate(ADAE_small, TRTA = ifelse(dplyr::row_number() ==
    1L, NA, TRTA)), variables = c(AESOC, AEDECOD), by = TRTA, id = USUBJID,
  denominator = dplyr::rename(ADSL, TRTA = TRT01A))
Message
  * Removing 1 row from `data` with NA or NaN values in "TRTA", "AESOC", and "AEDECOD" columns.

ard_stack_hierarchical(denominator) messaging

Code
  ard_stack_hierarchical(ADAE_small, variables = c(AESOC, AEDECOD), by = TRTA,
  id = USUBJID, denominator = character())
Condition
  Error in `ard_stack_hierarchical()`:
  ! The `denominator` argument must be a <data.frame> or an <integer>, not an empty character vector.

Code
  ard_stack_hierarchical(ADAE, variables = c(AESOC, AEDECOD), by = TRTA, id = USUBJID)
Condition
  Error in `ard_stack_hierarchical()`:
  ! The `denominator` argument cannot be missing.

ard_stack_hierarchical(variables, include) messaging

Code
  ard_stack_hierarchical(ADAE_small, variables = c(AESOC, AEDECOD), include = AESOC,
  by = TRTA, denominator = dplyr::rename(ADSL, TRTA = ARM), id = USUBJID)
Condition
  Error in `ard_stack_hierarchical()`:
  ! The last column specified in the `variables` (i.e. "AEDECOD") must be in the `include` argument.

ard_stack_hierarchical(by, overall) messaging

Code
  ard <- ard_stack_hierarchical(ADAE_small, variables = c(AESOC, AEDECOD),
  denominator = dplyr::rename(ADSL, TRTA = ARM), id = USUBJID, overall = TRUE)
Message
  The `by` argument must be specified when using `overall=TRUE`.
  i Setting `overall=FALSE`.

ard_stack_hierarchical_count(denominator) messaging

Code
  ard_stack_hierarchical_count(ADAE_small, variables = c(AESOC, AEDECOD), by = TRTA,
  denominator = letters)
Condition
  Error in `ard_stack_hierarchical_count()`:
  ! The `denominator` argument must be empty, a <data.frame>, or an <integer>, not a character vector.

ard_stack_hierarchical_count(denominator,total_n) messaging

Code
  ard <- ard_stack_hierarchical_count(ADAE_small, variables = c(AESOC, AEDECOD),
  total_n = TRUE)
Message
  The `denominator` argument must be specified when using `total_n=TRUE`.
  i Setting `total_n=FALSE`.

ard_stack_hierarchical_count(overall, denominator) messaging

Code
  ard <- ard_stack_hierarchical_count(ADAE_small, variables = c(AESOC, AEDECOD),
  by = TRTA, overall = TRUE)
Message
  The `denominator` argument must be specified as a data frame when using `overall=TRUE`.
  i Setting `overall=FALSE`.

ard_stack_hierarchical_count(overall)

Code
  dplyr::filter(ard_stack_hierarchical_count(ADAE_small, variables = c(AESOC, AEDECOD), by = c(TRTA, AESEV), denominator = dplyr::rename(ADSL, TRTA = ARM), overall = TRUE), !group1 %in% "TRTA" & !group2 %in% "TRTA" & !group3 %in% "TRTA" &
    !variable %in% "TRTA")
Message
  {cards} data frame: 18 x 15
Output
     group1 group1_level group2 group2_level group3 group3_level variable variable_level stat_name stat_label stat
  1   AESEV         MILD   <NA>                <NA>                 AESOC      GENERAL …         n          n    4
  2   AESEV         MILD   <NA>                <NA>                 AESOC      SKIN AND…         n          n    1
  3   AESEV     MODERATE   <NA>                <NA>                 AESOC      GENERAL …         n          n    0
  4   AESEV     MODERATE   <NA>                <NA>                 AESOC      SKIN AND…         n          n    1
  5    <NA>                <NA>                <NA>                 AESOC      GENERAL …         n          n    4
  6    <NA>                <NA>                <NA>                 AESOC      SKIN AND…         n          n    2
  7   AESEV         MILD  AESOC    GENERAL …   <NA>               AEDECOD      APPLICAT…         n          n    2
  8   AESEV         MILD  AESOC    GENERAL …   <NA>               AEDECOD      APPLICAT…         n          n    2
  9   AESEV         MILD  AESOC    SKIN AND…   <NA>               AEDECOD       ERYTHEMA         n          n    1
  10  AESEV         MILD  AESOC    SKIN AND…   <NA>               AEDECOD      PRURITUS…         n          n    0
  11  AESEV     MODERATE  AESOC    GENERAL …   <NA>               AEDECOD      APPLICAT…         n          n    0
  12  AESEV     MODERATE  AESOC    GENERAL …   <NA>               AEDECOD      APPLICAT…         n          n    0
  13  AESEV     MODERATE  AESOC    SKIN AND…   <NA>               AEDECOD       ERYTHEMA         n          n    0
  14  AESEV     MODERATE  AESOC    SKIN AND…   <NA>               AEDECOD      PRURITUS…         n          n    1
  15  AESOC    GENERAL …   <NA>                <NA>               AEDECOD      APPLICAT…         n          n    2
  16  AESOC    GENERAL …   <NA>                <NA>               AEDECOD      APPLICAT…         n          n    2
  17  AESOC    SKIN AND…   <NA>                <NA>               AEDECOD       ERYTHEMA         n          n    1
  18  AESOC    SKIN AND…   <NA>                <NA>               AEDECOD      PRURITUS…         n          n    1
Message
  i 4 more variables: context, fmt_fn, warning, error

ard_stack_hierarchical_count(overall,over_variables)

Code
  as.data.frame(dplyr::select(dplyr::filter(ard_stack_hierarchical_count(
    ADAE_small, variables = AESOC, by = TRTA, denominator = dplyr::rename(ADSL,
      TRTA = ARM), over_variables = TRUE, overall = TRUE), variable ==
    "..ard_hierarchical_overall.."), all_ard_groups(), "variable", "stat_name",
  "stat"))
Output
    group1         group1_level                     variable stat_name stat
  1   TRTA              Placebo ..ard_hierarchical_overall..         n    2
  2   TRTA Xanomeline High Dose ..ard_hierarchical_overall..         n    2
  3   TRTA  Xanomeline Low Dose ..ard_hierarchical_overall..         n    2
  4   <NA>                 NULL ..ard_hierarchical_overall..         n    6

cards documentation built on Oct. 4, 2024, 1:09 a.m.