ard_tabulate_max.md
In cardx: Extra Analysis Results Data Utilities

ard_tabulate_max() works with default settings

Code
  print(res, n = 20, columns = "all")
Message
  {cards} data frame: 27 x 11
Output
     group1 group1_level variable variable_level   context stat_name stat_label  stat fmt_fun warning error
  1    TRTA      Placebo    AESEV           MILD categori…         n          n    36       0              
  2    TRTA      Placebo    AESEV           MILD categori…         N          N    69       0              
  3    TRTA      Placebo    AESEV           MILD categori…         p          % 0.522    <fn>              
  4    TRTA      Placebo    AESEV       MODERATE categori…         n          n    26       0              
  5    TRTA      Placebo    AESEV       MODERATE categori…         N          N    69       0              
  6    TRTA      Placebo    AESEV       MODERATE categori…         p          % 0.377    <fn>              
  7    TRTA      Placebo    AESEV         SEVERE categori…         n          n     7       0              
  8    TRTA      Placebo    AESEV         SEVERE categori…         N          N    69       0              
  9    TRTA      Placebo    AESEV         SEVERE categori…         p          % 0.101    <fn>              
  10   TRTA    Xanomeli…    AESEV           MILD categori…         n          n    22       0              
  11   TRTA    Xanomeli…    AESEV           MILD categori…         N          N    79       0              
  12   TRTA    Xanomeli…    AESEV           MILD categori…         p          % 0.278    <fn>              
  13   TRTA    Xanomeli…    AESEV       MODERATE categori…         n          n    49       0              
  14   TRTA    Xanomeli…    AESEV       MODERATE categori…         N          N    79       0              
  15   TRTA    Xanomeli…    AESEV       MODERATE categori…         p          %  0.62    <fn>              
  16   TRTA    Xanomeli…    AESEV         SEVERE categori…         n          n     8       0              
  17   TRTA    Xanomeli…    AESEV         SEVERE categori…         N          N    79       0              
  18   TRTA    Xanomeli…    AESEV         SEVERE categori…         p          % 0.101    <fn>              
  19   TRTA    Xanomeli…    AESEV           MILD categori…         n          n    19       0              
  20   TRTA    Xanomeli…    AESEV           MILD categori…         N          N    77       0              
Message
  i 7 more rows
  i Use `print(n = ...)` to see more rows

Code
  print(ard_tabulate_max(dplyr::group_by(cards::ADAE, TRTA), variables = AESEV, id = USUBJID, denominator = cards::ADSL), n = 20, columns = "all")
Message
  `AESEV`: "MILD" < "MODERATE" < "SEVERE"
  {cards} data frame: 27 x 11
Output
     group1 group1_level variable variable_level   context stat_name stat_label  stat fmt_fun warning error
  1    TRTA      Placebo    AESEV           MILD categori…         n          n    36       0              
  2    TRTA      Placebo    AESEV           MILD categori…         N          N    86       0              
  3    TRTA      Placebo    AESEV           MILD categori…         p          % 0.419    <fn>              
  4    TRTA      Placebo    AESEV       MODERATE categori…         n          n    26       0              
  5    TRTA      Placebo    AESEV       MODERATE categori…         N          N    86       0              
  6    TRTA      Placebo    AESEV       MODERATE categori…         p          % 0.302    <fn>              
  7    TRTA      Placebo    AESEV         SEVERE categori…         n          n     7       0              
  8    TRTA      Placebo    AESEV         SEVERE categori…         N          N    86       0              
  9    TRTA      Placebo    AESEV         SEVERE categori…         p          % 0.081    <fn>              
  10   TRTA    Xanomeli…    AESEV           MILD categori…         n          n    22       0              
  11   TRTA    Xanomeli…    AESEV           MILD categori…         N          N    84       0              
  12   TRTA    Xanomeli…    AESEV           MILD categori…         p          % 0.262    <fn>              
  13   TRTA    Xanomeli…    AESEV       MODERATE categori…         n          n    49       0              
  14   TRTA    Xanomeli…    AESEV       MODERATE categori…         N          N    84       0              
  15   TRTA    Xanomeli…    AESEV       MODERATE categori…         p          % 0.583    <fn>              
  16   TRTA    Xanomeli…    AESEV         SEVERE categori…         n          n     8       0              
  17   TRTA    Xanomeli…    AESEV         SEVERE categori…         N          N    84       0              
  18   TRTA    Xanomeli…    AESEV         SEVERE categori…         p          % 0.095    <fn>              
  19   TRTA    Xanomeli…    AESEV           MILD categori…         n          n    19       0              
  20   TRTA    Xanomeli…    AESEV           MILD categori…         N          N    84       0              
Message
  i 7 more rows
  i Use `print(n = ...)` to see more rows

ard_tabulate_max(statistic) works

Code
  ard_tabulate_max(cards::ADAE, variables = AESEV, id = USUBJID, by = TRTA, denominator = cards::ADSL, statistic = ~"n")
Message
  `AESEV`: "MILD" < "MODERATE" < "SEVERE"
  {cards} data frame: 9 x 11
Output
    group1 group1_level variable variable_level stat_name stat_label stat
  1   TRTA      Placebo    AESEV           MILD         n          n   36
  2   TRTA      Placebo    AESEV       MODERATE         n          n   26
  3   TRTA      Placebo    AESEV         SEVERE         n          n    7
  4   TRTA    Xanomeli…    AESEV           MILD         n          n   22
  5   TRTA    Xanomeli…    AESEV       MODERATE         n          n   49
  6   TRTA    Xanomeli…    AESEV         SEVERE         n          n    8
  7   TRTA    Xanomeli…    AESEV           MILD         n          n   19
  8   TRTA    Xanomeli…    AESEV       MODERATE         n          n   42
  9   TRTA    Xanomeli…    AESEV         SEVERE         n          n   16
Message
  i 4 more variables: context, fmt_fun, warning, error

ard_tabulate_max(denominator) works

Code
  ard_tabulate_max(cards::ADAE, variables = AESEV, id = USUBJID, by = TRTA)
Message
  `AESEV`: "MILD" < "MODERATE" < "SEVERE"
  {cards} data frame: 27 x 11
Output
     group1 group1_level variable variable_level stat_name stat_label  stat
  1    TRTA      Placebo    AESEV           MILD         n          n    36
  2    TRTA      Placebo    AESEV           MILD         N          N    69
  3    TRTA      Placebo    AESEV           MILD         p          % 0.522
  4    TRTA      Placebo    AESEV       MODERATE         n          n    26
  5    TRTA      Placebo    AESEV       MODERATE         N          N    69
  6    TRTA      Placebo    AESEV       MODERATE         p          % 0.377
  7    TRTA      Placebo    AESEV         SEVERE         n          n     7
  8    TRTA      Placebo    AESEV         SEVERE         N          N    69
  9    TRTA      Placebo    AESEV         SEVERE         p          % 0.101
  10   TRTA    Xanomeli…    AESEV           MILD         n          n    22
Message
  i 17 more rows
  i Use `print(n = ...)` to see more rows
  i 4 more variables: context, fmt_fun, warning, error

Code
  ard_tabulate_max(cards::ADAE, variables = AESEV, id = USUBJID, by = TRTA, denominator = 100)
Message
  `AESEV`: "MILD" < "MODERATE" < "SEVERE"
  {cards} data frame: 27 x 11
Output
     group1 group1_level variable variable_level stat_name stat_label stat
  1    TRTA      Placebo    AESEV           MILD         n          n   36
  2    TRTA      Placebo    AESEV           MILD         N          N  100
  3    TRTA      Placebo    AESEV           MILD         p          % 0.36
  4    TRTA      Placebo    AESEV       MODERATE         n          n   26
  5    TRTA      Placebo    AESEV       MODERATE         N          N  100
  6    TRTA      Placebo    AESEV       MODERATE         p          % 0.26
  7    TRTA      Placebo    AESEV         SEVERE         n          n    7
  8    TRTA      Placebo    AESEV         SEVERE         N          N  100
  9    TRTA      Placebo    AESEV         SEVERE         p          % 0.07
  10   TRTA    Xanomeli…    AESEV           MILD         n          n   22
Message
  i 17 more rows
  i Use `print(n = ...)` to see more rows
  i 4 more variables: context, fmt_fun, warning, error

ard_tabulate_max() works with pre-ordered factor variables

Code
  print(res, n = 20, columns = "all")
Message
  {cards} data frame: 27 x 11
Output
     group1 group1_level variable variable_level   context stat_name stat_label  stat fmt_fun warning error
  1    TRTA      Placebo    AESEV           MILD categori…         n          n    36       0              
  2    TRTA      Placebo    AESEV           MILD categori…         N          N    86       0              
  3    TRTA      Placebo    AESEV           MILD categori…         p          % 0.419    <fn>              
  4    TRTA      Placebo    AESEV       MODERATE categori…         n          n    26       0              
  5    TRTA      Placebo    AESEV       MODERATE categori…         N          N    86       0              
  6    TRTA      Placebo    AESEV       MODERATE categori…         p          % 0.302    <fn>              
  7    TRTA      Placebo    AESEV         SEVERE categori…         n          n     7       0              
  8    TRTA      Placebo    AESEV         SEVERE categori…         N          N    86       0              
  9    TRTA      Placebo    AESEV         SEVERE categori…         p          % 0.081    <fn>              
  10   TRTA    Xanomeli…    AESEV           MILD categori…         n          n    22       0              
  11   TRTA    Xanomeli…    AESEV           MILD categori…         N          N    84       0              
  12   TRTA    Xanomeli…    AESEV           MILD categori…         p          % 0.262    <fn>              
  13   TRTA    Xanomeli…    AESEV       MODERATE categori…         n          n    49       0              
  14   TRTA    Xanomeli…    AESEV       MODERATE categori…         N          N    84       0              
  15   TRTA    Xanomeli…    AESEV       MODERATE categori…         p          % 0.583    <fn>              
  16   TRTA    Xanomeli…    AESEV         SEVERE categori…         n          n     8       0              
  17   TRTA    Xanomeli…    AESEV         SEVERE categori…         N          N    84       0              
  18   TRTA    Xanomeli…    AESEV         SEVERE categori…         p          % 0.095    <fn>              
  19   TRTA    Xanomeli…    AESEV           MILD categori…         n          n    19       0              
  20   TRTA    Xanomeli…    AESEV           MILD categori…         N          N    84       0              
Message
  i 7 more rows
  i Use `print(n = ...)` to see more rows

ard_tabulate_max() errors with incomplete factor columns

Code
  ard_tabulate_max(dplyr::mutate(cards::ADAE, AESOC = factor(AESOC, levels = character(
    0))), variables = AESOC, id = USUBJID, by = TRTA)
Condition
  Error in `ard_tabulate_max()`:
  ! Factors with empty "levels" attribute are not allowed, which was identified in column "AESOC".

Code
  ard_tabulate_max(dplyr::mutate(cards::ADAE, SEX = factor(SEX, levels = c("F",
    "M", NA), exclude = NULL)), variables = SEX, id = USUBJID, by = TRTA)
Condition
  Error in `ard_tabulate_max()`:
  ! Factors with NA levels are not allowed, which are present in column "SEX".

ard_tabulate_max() works without any variables

Code
  ard_tabulate_max(data = cards::ADAE, variables = starts_with("xxxx"), id = USUBJID,
  by = c(TRTA, AESEV))
Message
  {cards} data frame: 0 x 0
Output
  data frame with 0 columns and 0 rows

ard_tabulate_max() strata works

Code
  res
Message
  {cards} data frame: 18 x 11
Output
     group1 group1_level variable variable_level stat_name stat_label  stat
  1    TRTA    Xanomeli…    AESEV           MILD         n          n    22
  2    TRTA    Xanomeli…    AESEV           MILD         N          N    79
  3    TRTA    Xanomeli…    AESEV           MILD         p          % 0.278
  4    TRTA    Xanomeli…    AESEV       MODERATE         n          n    49
  5    TRTA    Xanomeli…    AESEV       MODERATE         N          N    79
  6    TRTA    Xanomeli…    AESEV       MODERATE         p          %  0.62
  7    TRTA    Xanomeli…    AESEV         SEVERE         n          n     8
  8    TRTA    Xanomeli…    AESEV         SEVERE         N          N    79
  9    TRTA    Xanomeli…    AESEV         SEVERE         p          % 0.101
  10   TRTA    Xanomeli…    AESEV           MILD         n          n    19
  11   TRTA    Xanomeli…    AESEV           MILD         N          N    77
  12   TRTA    Xanomeli…    AESEV           MILD         p          % 0.247
  13   TRTA    Xanomeli…    AESEV       MODERATE         n          n    42
  14   TRTA    Xanomeli…    AESEV       MODERATE         N          N    77
  15   TRTA    Xanomeli…    AESEV       MODERATE         p          % 0.545
  16   TRTA    Xanomeli…    AESEV         SEVERE         n          n    16
  17   TRTA    Xanomeli…    AESEV         SEVERE         N          N    77
  18   TRTA    Xanomeli…    AESEV         SEVERE         p          % 0.208
Message
  i 4 more variables: context, fmt_fun, warning, error