catnet: Categorical Bayesian Network Inference

Structure learning and parameter estimation of discrete Bayesian networks using likelihood-based criteria. Exhaustive search for fixed node orders and stochastic search of optimal orders via simulated annealing algorithm are implemented.

AuthorNikolay Balov, Peter Salzman
Date of publication2016-06-12 19:03:05
MaintainerNikolay Balov <nhbalov@gmail.com>
LicenseGPL (>= 2)
Version1.15.0

View on CRAN

Man pages

alarm: The ALARM network

breast: Breast cancer data

catnet-package: catnet: Categorical Bayesian network inference

catNetwork-class: Class "catNetwork"

catNetworkDistance-class: Class "catNetworkDistance"

catNetworkEvaluate-class: Class "catNetworkEvaluate"

classification: Classification demonstration

cnCatnetFromEdges: catNetwork from Edges

cnCatnetFromSif: Categorical Network from Simple Interaction File (SIF) and...

cnCluster: Network Clustering

cnCompare: Network Comparison

cnComplexity: Network Complexity

cnDiscretize: Data Categorization

cnDot: Network Description File

cnEdges: Network Edges

cnEntropy: Pairwise Node Entropy

cnFind: Find Network by Complexity

cnFindAIC: Find Network by AIC

cnFindBIC: Find Network by BIC

cnLoglik: Sample Log-likelihood

cnMatEdges: Network Edge Matrix

cnMatParents: Network Parent Matrix

cnNew: New catNetwork

cnNodeLoglik: Node Log-likelihood

cnNodeMarginalProb: Probability Calculations

cnNodes: Netwok Nodes

cnNodeSampleLoglik: Node Log-likelihood

cnNumNodes: Network Size

cnOrder: Network Node Order

cnParents: Network Parent Structure

cnParHist: Parenthood Histogram

cnPearsonTest: Goodness of Fit Test

cnPlot: Plot Network

cnPredict: Prediction

cnProb: Conditional Probability Structure

cnRandomCatnet: Random Network

cnReorderNodes: Reorder Network Nodes

cnSamples: Samples from Network

cnSearchHist: Parent Histogram Matrix

cnSearchOrder: Network Search for Given Node Order

cnSearchSA: Stochastic Network Search

cnSetProb: Set Probability from Data

cnSetSeed: Random Generator Seed

cnSubNetwork: Sub-Network

CPDAG-class: Class CPDAG

dag2cpdag: Complete Network Representation

isDAG: Check Direct Acyclic Graph (DAG) Condition

novartis: Novartis multi-tissue data

Files in this package

catnet
catnet/inst
catnet/inst/doc
catnet/inst/doc/catnet.pdf
catnet/inst/doc/catnet.Rnw
catnet/inst/doc/catnet.R
catnet/src
catnet/src/rcatnet_sa.h
catnet/src/cache.h
catnet/src/pthread.cpp
catnet/src/ccnInit.c
catnet/src/rcatnet.h
catnet/src/rcatnet_search.h
catnet/src/catnet_rexport.cpp
catnet/src/catnet_search2.h
catnet/src/problist.h
catnet/src/thread.h
catnet/src/rcatnet_search.cpp
catnet/src/rcatnet_sa.cpp
catnet/src/utils.h
catnet/src/utils.cpp
catnet/src/catnet_search.h
catnet/src/catnet_rexport.h
catnet/src/search_params.h
catnet/src/catnet_class.h
catnet/src/rcatnet.cpp
catnet/src/catnet_entropy.cpp
catnet/src/rcatnet_hist.cpp
catnet/src/cache.cpp
catnet/src/rcatnet_hist.h
catnet/NAMESPACE
catnet/demo
catnet/demo/lung.r
catnet/demo/breast.r
catnet/demo/diabetesLoad.r
catnet/demo/diabetes.r
catnet/demo/lungLoad.r
catnet/demo/novartis.r
catnet/demo/00Index
catnet/demo/test.r
catnet/demo/cvKfold.r
catnet/demo/dirprob.r
catnet/demo/alarm.r
catnet/data
catnet/data/novartis.rda
catnet/data/breast.rda
catnet/data/alarmnet.rda
catnet/R
catnet/R/catnet.cluster.R catnet/R/catnet.categor.R catnet/R/catnet.probs.R catnet/R/catnet.chisq.R catnet/R/catnet.bif.R catnet/R/catnet.predict.R catnet/R/catnet.def.R catnet/R/catnet.dags.R catnet/R/catnet.find.R catnet/R/catnet.plot.R catnet/R/catnet.histo.R catnet/R/catnet.quant.R catnet/R/catnet.dist.R catnet/R/catnet.entropy.R catnet/R/catnet.class.R catnet/R/catnet.joint.prob.R catnet/R/graph2catnet.R catnet/R/catnet.marginal.prob.R catnet/R/catnet.samples.R catnet/R/zzz.R catnet/R/catnet.pathway.R catnet/R/catnet.search.R catnet/R/catnet.loglik.R
catnet/vignettes
catnet/vignettes/catnet.Rnw
catnet/MD5
catnet/build
catnet/build/vignette.rds
catnet/DESCRIPTION
catnet/man
catnet/man/cnCompare.Rd catnet/man/cnNodes.Rd catnet/man/cnFindAIC.Rd catnet/man/cnNumNodes.Rd catnet/man/cnDiscretize.Rd catnet/man/cnComplexity.Rd catnet/man/catNetworkDistance-class.Rd catnet/man/cnMatEdges.Rd catnet/man/cnSubNetwork.Rd catnet/man/cnPredict.Rd catnet/man/breast.Rd catnet/man/cnNodeSampleLoglik.Rd catnet/man/cnEntropy.Rd catnet/man/cnNodeMarginalProb.Rd catnet/man/cnMatParents.Rd catnet/man/dag2cpdag.Rd catnet/man/catNetwork-class.Rd catnet/man/cnEdges.Rd catnet/man/cnNew.Rd catnet/man/cnSamples.Rd catnet/man/cnSearchSA.Rd catnet/man/cnCluster.Rd catnet/man/cnProb.Rd catnet/man/cnLoglik.Rd catnet/man/classification.Rd catnet/man/cnSetProb.Rd catnet/man/CPDAG-class.Rd catnet/man/cnNodeLoglik.Rd catnet/man/cnSearchHist.Rd catnet/man/cnPearsonTest.Rd catnet/man/isDAG.Rd catnet/man/cnOrder.Rd catnet/man/novartis.Rd catnet/man/cnFind.Rd catnet/man/cnParHist.Rd catnet/man/cnDot.Rd catnet/man/cnCatnetFromEdges.Rd catnet/man/catNetworkEvaluate-class.Rd catnet/man/cnFindBIC.Rd catnet/man/cnSearchOrder.Rd catnet/man/cnRandomCatnet.Rd catnet/man/cnParents.Rd catnet/man/cnSetSeed.Rd catnet/man/cnReorderNodes.Rd catnet/man/cnCatnetFromSif.Rd catnet/man/cnPlot.Rd catnet/man/catnet-package.Rd catnet/man/alarm.Rd

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