catnet: Categorical Bayesian Network Inference

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Structure learning and parameter estimation of discrete Bayesian networks using likelihood-based criteria. Exhaustive search for fixed node orders and stochastic search of optimal orders via simulated annealing algorithm are implemented.

Author
Nikolay Balov, Peter Salzman
Date of publication
2016-06-12 19:03:05
Maintainer
Nikolay Balov <nhbalov@gmail.com>
License
GPL (>= 2)
Version
1.15.0

View on CRAN

Man pages

alarm
The ALARM network
breast
Breast cancer data
catnet-package
catnet: Categorical Bayesian network inference
catNetwork-class
Class "catNetwork"
catNetworkDistance-class
Class "catNetworkDistance"
catNetworkEvaluate-class
Class "catNetworkEvaluate"
classification
Classification demonstration
cnCatnetFromEdges
catNetwork from Edges
cnCatnetFromSif
Categorical Network from Simple Interaction File (SIF) and...
cnCluster
Network Clustering
cnCompare
Network Comparison
cnComplexity
Network Complexity
cnDiscretize
Data Categorization
cnDot
Network Description File
cnEdges
Network Edges
cnEntropy
Pairwise Node Entropy
cnFind
Find Network by Complexity
cnFindAIC
Find Network by AIC
cnFindBIC
Find Network by BIC
cnLoglik
Sample Log-likelihood
cnMatEdges
Network Edge Matrix
cnMatParents
Network Parent Matrix
cnNew
New catNetwork
cnNodeLoglik
Node Log-likelihood
cnNodeMarginalProb
Probability Calculations
cnNodes
Netwok Nodes
cnNodeSampleLoglik
Node Log-likelihood
cnNumNodes
Network Size
cnOrder
Network Node Order
cnParents
Network Parent Structure
cnParHist
Parenthood Histogram
cnPearsonTest
Goodness of Fit Test
cnPlot
Plot Network
cnPredict
Prediction
cnProb
Conditional Probability Structure
cnRandomCatnet
Random Network
cnReorderNodes
Reorder Network Nodes
cnSamples
Samples from Network
cnSearchHist
Parent Histogram Matrix
cnSearchOrder
Network Search for Given Node Order
cnSearchSA
Stochastic Network Search
cnSetProb
Set Probability from Data
cnSetSeed
Random Generator Seed
cnSubNetwork
Sub-Network
CPDAG-class
Class CPDAG
dag2cpdag
Complete Network Representation
isDAG
Check Direct Acyclic Graph (DAG) Condition
novartis
Novartis multi-tissue data

Files in this package

catnet
catnet/inst
catnet/inst/doc
catnet/inst/doc/catnet.pdf
catnet/inst/doc/catnet.Rnw
catnet/inst/doc/catnet.R
catnet/src
catnet/src/rcatnet_sa.h
catnet/src/cache.h
catnet/src/pthread.cpp
catnet/src/ccnInit.c
catnet/src/rcatnet.h
catnet/src/rcatnet_search.h
catnet/src/catnet_rexport.cpp
catnet/src/catnet_search2.h
catnet/src/problist.h
catnet/src/thread.h
catnet/src/rcatnet_search.cpp
catnet/src/rcatnet_sa.cpp
catnet/src/utils.h
catnet/src/utils.cpp
catnet/src/catnet_search.h
catnet/src/catnet_rexport.h
catnet/src/search_params.h
catnet/src/catnet_class.h
catnet/src/rcatnet.cpp
catnet/src/catnet_entropy.cpp
catnet/src/rcatnet_hist.cpp
catnet/src/cache.cpp
catnet/src/rcatnet_hist.h
catnet/NAMESPACE
catnet/demo
catnet/demo/lung.r
catnet/demo/breast.r
catnet/demo/diabetesLoad.r
catnet/demo/diabetes.r
catnet/demo/lungLoad.r
catnet/demo/novartis.r
catnet/demo/00Index
catnet/demo/test.r
catnet/demo/cvKfold.r
catnet/demo/dirprob.r
catnet/demo/alarm.r
catnet/data
catnet/data/novartis.rda
catnet/data/breast.rda
catnet/data/alarmnet.rda
catnet/R
catnet/R/catnet.cluster.R
catnet/R/catnet.categor.R
catnet/R/catnet.probs.R
catnet/R/catnet.chisq.R
catnet/R/catnet.bif.R
catnet/R/catnet.predict.R
catnet/R/catnet.def.R
catnet/R/catnet.dags.R
catnet/R/catnet.find.R
catnet/R/catnet.plot.R
catnet/R/catnet.histo.R
catnet/R/catnet.quant.R
catnet/R/catnet.dist.R
catnet/R/catnet.entropy.R
catnet/R/catnet.class.R
catnet/R/catnet.joint.prob.R
catnet/R/graph2catnet.R
catnet/R/catnet.marginal.prob.R
catnet/R/catnet.samples.R
catnet/R/zzz.R
catnet/R/catnet.pathway.R
catnet/R/catnet.search.R
catnet/R/catnet.loglik.R
catnet/vignettes
catnet/vignettes/catnet.Rnw
catnet/MD5
catnet/build
catnet/build/vignette.rds
catnet/DESCRIPTION
catnet/man
catnet/man/cnCompare.Rd
catnet/man/cnNodes.Rd
catnet/man/cnFindAIC.Rd
catnet/man/cnNumNodes.Rd
catnet/man/cnDiscretize.Rd
catnet/man/cnComplexity.Rd
catnet/man/catNetworkDistance-class.Rd
catnet/man/cnMatEdges.Rd
catnet/man/cnSubNetwork.Rd
catnet/man/cnPredict.Rd
catnet/man/breast.Rd
catnet/man/cnNodeSampleLoglik.Rd
catnet/man/cnEntropy.Rd
catnet/man/cnNodeMarginalProb.Rd
catnet/man/cnMatParents.Rd
catnet/man/dag2cpdag.Rd
catnet/man/catNetwork-class.Rd
catnet/man/cnEdges.Rd
catnet/man/cnNew.Rd
catnet/man/cnSamples.Rd
catnet/man/cnSearchSA.Rd
catnet/man/cnCluster.Rd
catnet/man/cnProb.Rd
catnet/man/cnLoglik.Rd
catnet/man/classification.Rd
catnet/man/cnSetProb.Rd
catnet/man/CPDAG-class.Rd
catnet/man/cnNodeLoglik.Rd
catnet/man/cnSearchHist.Rd
catnet/man/cnPearsonTest.Rd
catnet/man/isDAG.Rd
catnet/man/cnOrder.Rd
catnet/man/novartis.Rd
catnet/man/cnFind.Rd
catnet/man/cnParHist.Rd
catnet/man/cnDot.Rd
catnet/man/cnCatnetFromEdges.Rd
catnet/man/catNetworkEvaluate-class.Rd
catnet/man/cnFindBIC.Rd
catnet/man/cnSearchOrder.Rd
catnet/man/cnRandomCatnet.Rd
catnet/man/cnParents.Rd
catnet/man/cnSetSeed.Rd
catnet/man/cnReorderNodes.Rd
catnet/man/cnCatnetFromSif.Rd
catnet/man/cnPlot.Rd
catnet/man/catnet-package.Rd
catnet/man/alarm.Rd