Man pages for caugi
Causal Graph Interface
| add-caugi_plot-caugi_plot | Compose Plots Horizontally |
| adjustment_set | Compute an adjustment set |
| aid | Adjustment Identification Distance |
| all_adjustment_sets_admg | Get all valid adjustment sets in an ADMG |
| all_backdoor_sets | Get all backdoor sets up to a certain size. |
| all.equal.caugi-caugi | Compare caugi objects for equality |
| ancestors | Get ancestors of nodes in a 'caugi' |
| anteriors | Get anteriors of nodes in a 'caugi' |
| as_adjacency | Convert a caugi to an adjacency matrix |
| as_bnlearn | Convert a caugi to a bnlearn network |
| as_caugi | Convert to a 'caugi' |
| as_dagitty | Convert a caugi to a dagitty graph |
| as_igraph | Convert a caugi to an igraph object |
| build | Build the 'caugi' graph |
| caugi | Create a 'caugi' from edge expressions. |
| caugi_default_options | Default options for caugi |
| caugi_deserialize | Deserialize caugi Graph from JSON String |
| caugi_dot | S7 Class for DOT Export |
| caugi-equality | Equality operators for caugi objects |
| caugi_export | S7 Base Class for Caugi Exports |
| caugi_graphml | S7 Class for GraphML Export |
| caugi_layout | Compute Graph Layout |
| caugi_layout_bipartite | Bipartite Graph Layout |
| caugi_layout_circle | Circle Layout |
| caugi_layout_fruchterman_reingold | Fruchterman-Reingold Force-Directed Layout |
| caugi_layout_kamada_kawai | Kamada-Kawai Stress Minimization Layout |
| caugi_layout_sugiyama | Sugiyama Hierarchical Layout |
| caugi_layout_tiered | Tiered Graph Layout |
| caugi_mermaid | S7 Class for Mermaid Export |
| caugi_options | Get or set global options for caugi |
| caugi-package | 'caugi' (Causal Graph Interface) |
| caugi_plot | S7 Class for caugi Plot |
| caugi_serialize | Serialize caugi Graph to JSON String |
| caugi_verbs | Manipulate nodes and edges of a 'caugi' |
| children | Get children of nodes in a 'caugi' |
| compare_proxy.caugi-caugi | Proxy for waldo comparison of caugi objects |
| components | Get connected components of a graph |
| condition_marginalize | Marginalize and/or condition on variables in an ancestral... |
| count_dags | Count DAGs in a Markov equivalence class |
| dag_from_pdag | Extend a PDAG to a DAG using the Dor-Tarsi Algorithm |
| descendants | Get descendants of nodes in a 'caugi' |
| districts | Get districts (c-components) of an ADMG or AG |
| divide-caugi_plot-caugi_plot | Compose Plots Vertically |
| dot-build_edges_from_session | Build edges data.table from session |
| dot-caugi_fit_on_line | Fit items on a line |
| dot-collect_edges_nodes | Collect edges and nodes |
| dot-combine_plus | Combine terms with '+' |
| dot-contains_edge | Does the expression contain an edge call? |
| dot-edge_constructor | Edge constructor |
| dot-edge_constructor_idx | Edge constructor using indices. |
| dot-edge_ops_get | Get edge operators |
| dot-edge_spec | Edge specification infix operators |
| dot-edge_type_from_anteriors | Infer edge type from anterior relationships |
| dot-edge_units_to_dt | Turn edge units into a 'data.table' of edges |
| dot-expand_nodes | Expand node expressions |
| dot-expand_targets | Helper to expand the right-hand side of an edge specification |
| dot-flatten_edge_chain | Flatten a chained edge expression |
| dot-get_edges | Build edges 'data.table' from verb call. |
| dot-get_nodes | Get nodes 'data.table' from verb call. |
| dot-glyph_map_get | Get edge operators |
| dot-glyph_of | Get glyph for an operator |
| dot-is_edge_call | Is it an edge call / expression? |
| dot-is_node_expr | Is it a node expr? |
| dot-node_constructor | Node constructor |
| dot-nodes_to_indices | Convert node names to 0-based indices |
| dot-not_m_separated_for_all_subsets | Check if nodes are NOT m-separated for all conditioning... |
| dot-parse_edge_arg | Parse one caugi(...) argument |
| dot-register_edge | Register a new edge operator |
| dot-resolve_idx0_get | Resolve node name or index to 0-based index. |
| dot-segment_units | Create an edge unit from lhs, op, rhs |
| dot-session_to_caugi | Convert a graph session to a 'caugi' S7 object |
| dot-set_names | Set names to an object |
| dot-split_plus | Expand target expressions with '=' |
| dot-sync_session_inplace | Update an existing session in place |
| dot-update_caugi | Update nodes and edges of a 'caugi' |
| dot-validate_nodes_and_index | Validate nodes or index argument |
| d_separated | Are X and Y d-separated given Z? |
| edge_operators | Infix operators for edge specifications |
| edges | Get edges of a 'caugi'. |
| edge_types | Get the edge types of a 'caugi'. |
| enumerate_dags | Enumerate all DAGs in a Markov equivalence class |
| exogenize | Exogenize a graph |
| exogenous | Get all exogenous nodes in a 'caugi' |
| export-classes | Export Format Classes |
| format-caugi | Caugi Native Format Serialization |
| format-dot | DOT Format Export and Import |
| format-graphml | GraphML Format Export and Import |
| format-mermaid | Mermaid Format Export |
| generate_graph | Generate a 'caugi' using Erdős-Rényi. |
| hd | Hamming Distance |
| is_acyclic | Is the 'caugi' acyclic? |
| is_admg | Is the 'caugi' graph an ADMG? |
| is_ag | Is the 'caugi' graph an AG? |
| is_caugi | Is it a 'caugi' graph? |
| is_cpdag | Is the 'caugi' graph a CPDAG? |
| is_dag | Is the 'caugi' graph a DAG? |
| is_edge_symmetric | Is the edge symmetric? |
| is_empty_caugi | Is the 'caugi' graph empty? |
| is_mag | Is the 'caugi' graph a MAG? |
| is_mpdag | Is the 'caugi' graph an MPDAG? |
| is_pdag | Is the 'caugi' graph a PDAG? |
| is_simple | Is the 'caugi' graph simple? |
| is_ug | Is the 'caugi' graph an UG? |
| is_valid_adjustment_admg | Is a set a valid adjustment set in an ADMG? |
| is_valid_backdoor | Is a backdoor set valid? |
| knit_print.caugi_export | Knit Print Method for caugi_export |
| latent_project | Project latent variables from a DAG to an ADMG |
| length.caugi | Length of a 'caugi' |
| makeContent.caugi_edge_grob | Make Content for Custom Edge Grob |
| markov_blanket | Get Markov blanket of nodes in a 'caugi' |
| meek_closure | Apply Meek closure to a PDAG |
| minimal_separator | Compute a minimal separator |
| moralize | Moralize a DAG |
| m_separated | M-separation test for AGs and ADMGs |
| mutate_caugi | Mutate 'caugi' class |
| neighbors | Get neighbors of nodes in a 'caugi' |
| nodes | Get nodes or edges of a 'caugi' |
| normalize_latent_structure | Normalize latent structure in a DAG |
| parents | Get parents of nodes in a 'caugi' |
| plot.caugi | Create a caugi Graph Plot Object |
| posteriors | Get posteriors of nodes in a 'caugi' |
| print.caugi | Print a 'caugi' |
| read_caugi | Read caugi Graph from File |
| read_graphml | Read GraphML File to caugi Graph |
| register_caugi_edge | Register a new edge type in the global registry. |
| registry | 'caugi' edge registry |
| same_nodes | Same nodes? |
| shd | Structural Hamming Distance |
| simulate_data | Simulate data from a 'caugi' DAG. |
| skeleton | Get the skeleton of a graph |
| spouses | Get spouses (bidirected neighbors) of nodes in an ADMG |
| subgraph | Get the induced subgraph |
| to_dot | Export caugi Graph to DOT Format |
| to_graphml | Export caugi Graph to GraphML Format |
| to_mermaid | Export caugi Graph to Mermaid Format |
| topological_sort | Get a topological ordering of a DAG |
| write_caugi | Write caugi Graph to File |
| write_dot | Write caugi Graph to DOT File |
| write_graphml | Write caugi Graph to GraphML File |
| write_mermaid | Write caugi Graph to Mermaid File |
