ccChooser: Developing a core collections

Share:

ccChooser can be used to developing and evaluation of core collections for germplasm collections (entire collection). This package used to develop a core collection for biological resources like genbanks. A core collection is defined as a sample of accessions that represent, with the lowest possible level of redundancy, the genetic diversity (the richness of gene or genotype categories) of the entire collection. The establishing a core collection that represents genetic diversity of the entire collection with minimum loss of its original diversity and minimum redundancies is an important problem for gene-banks curators and crop breeders. ccChooser establish core collection base on phenotypic data (agronomic, morphological, phenological).

Author
Marcin Studnicki and Konrad Debski
Date of publication
2012-09-26 03:01:39
Maintainer
Marcin Studnicki <marcin_studnicki@sggw.pl>
License
GPL (>= 2)
Version
0.2.6

View on CRAN

Man pages

allocc
Allocation accesions
ccChooser-package
Developing a core collections
dactylis_CC
Core collection of orchadgrass
dactylis_EC
The orchadgrass germplasm collection
evalucc
Evaluation of core collection.
randomcc
Random selection of core collections
stratcc
Stratified selection of core collections

Files in this package

ccChooser
ccChooser/MD5
ccChooser/R
ccChooser/R/VD.R
ccChooser/R/stratcc.R
ccChooser/R/RR.R
ccChooser/R/randomcc.R
ccChooser/R/PRO.R
ccChooser/R/MD.R
ccChooser/R/LOG.R
ccChooser/R/evalucc.R
ccChooser/R/DD.R
ccChooser/R/D3.R
ccChooser/R/D2.R
ccChooser/R/allocc.R
ccChooser/NAMESPACE
ccChooser/man
ccChooser/man/stratcc.Rd
ccChooser/man/randomcc.Rd
ccChooser/man/evalucc.Rd
ccChooser/man/dactylis_EC.Rd
ccChooser/man/dactylis_CC.Rd
ccChooser/man/ccChooser-package.Rd
ccChooser/man/allocc.Rd
ccChooser/DESCRIPTION
ccChooser/data
ccChooser/data/dactylis_EC.rda
ccChooser/data/dactylis_CC.rda