ccdrAlgorithm: CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks

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Implementation of the CCDr (Concave penalized Coordinate Descent with reparametrization) structure learning algorithm as described in Aragam and Zhou (2015) <http://www.jmlr.org/papers/v16/aragam15a.html>. This is a fast, score-based method for learning Bayesian networks that uses sparse regularization and block-cyclic coordinate descent.

Author
Bryon Aragam [aut, cre], Dacheng Zhang [aut]
Date of publication
2016-11-20 20:24:35
Maintainer
Bryon Aragam <sparsebn@gmail.com>
License
GPL (>= 2)
Version
0.0.2
URLs

View on CRAN

Man pages

ccdrAlgorithm
ccdrAlgorithm: CCDr Algorithm for Learning Sparse Gaussian...
ccdr.run
Main CCDr Algorithm

Files in this package

ccdrAlgorithm
ccdrAlgorithm/inst
ccdrAlgorithm/inst/CITATION
ccdrAlgorithm/tests
ccdrAlgorithm/tests/testthat.R
ccdrAlgorithm/tests/testthat
ccdrAlgorithm/tests/testthat/test-default_run.R
ccdrAlgorithm/tests/testthat/test-test_cases.R
ccdrAlgorithm/tests/testthat/test-ccdr_gridR.R
ccdrAlgorithm/tests/testthat/test-s3_as.R
ccdrAlgorithm/tests/testthat/test-s3_is.R
ccdrAlgorithm/tests/testthat/test-get_adjacency_matrix.R
ccdrAlgorithm/tests/testthat/test-num_edges.R
ccdrAlgorithm/tests/testthat/test-ccdr_singleR.R
ccdrAlgorithm/tests/testthat/helper-ccdrAlgorithm-random_dag.R
ccdrAlgorithm/tests/testthat/test-num_nodes.R
ccdrAlgorithm/tests/testthat/helper-ccdrAlgorithm-generate_objects.R
ccdrAlgorithm/tests/testthat/test-ccdr_run.R
ccdrAlgorithm/tests/testthat/helper-ccdrAlgorithm-get_rhos.R
ccdrAlgorithm/tests/testthat/test-ccdr_ivn.R
ccdrAlgorithm/tests/testthat/test-ccdr_call.R
ccdrAlgorithm/src
ccdrAlgorithm/src/PenaltyFunction.h
ccdrAlgorithm/src/SparseBlockMatrix.h
ccdrAlgorithm/src/defines.h
ccdrAlgorithm/src/log.h
ccdrAlgorithm/src/algorithm.h
ccdrAlgorithm/src/debug.h
ccdrAlgorithm/src/CCDrAlgorithm.h
ccdrAlgorithm/src/penalties.h
ccdrAlgorithm/src/RcppExports.cpp
ccdrAlgorithm/src/rcpp_wrap.cpp
ccdrAlgorithm/NAMESPACE
ccdrAlgorithm/NEWS.md
ccdrAlgorithm/R
ccdrAlgorithm/R/ccdrAlgorithm-functions.R
ccdrAlgorithm/R/s3-SparseBlockMatrixR.R
ccdrAlgorithm/R/ccdrAlgorithm-main.R
ccdrAlgorithm/R/ccdrAlgorithm.R
ccdrAlgorithm/R/RcppExports.R
ccdrAlgorithm/R/s3-generics.R
ccdrAlgorithm/R/zzz.R
ccdrAlgorithm/README.md
ccdrAlgorithm/MD5
ccdrAlgorithm/DESCRIPTION
ccdrAlgorithm/man
ccdrAlgorithm/man/ccdrAlgorithm.Rd
ccdrAlgorithm/man/ccdr.run.Rd