cellpypes: Cell Type Pipes for Single-Cell RNA Sequencing Data

Annotate single-cell RNA sequencing data manually based on marker gene thresholds. Find cell type rules (gene+threshold) through exploration, use the popular piping operator '%>%' to reconstruct complex cell type hierarchies. 'cellpypes' models technical noise to find positive and negative cells for a given expression threshold and returns cell type labels or pseudobulks. Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest features.

Getting started

Package details

AuthorFelix Frauhammer [aut, cre]
MaintainerFelix Frauhammer <felixfrauhammer@gmail.com>
LicenseGPL (>= 3)
URL https://github.com/FelixTheStudent/cellpypes
Package repositoryView on CRAN
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cellpypes documentation built on May 29, 2024, 1:24 a.m.