calc_c_closure: Calculate canopy closure date

In cercospoRa: Process Based Epidemiological Model for Cercospora Leaf Spot of Sugar Beet

Calculate canopy closure date

Description

Calculate canopy closure date

Usage

calc_c_closure(param_rxt, x1 = 1.3, k = 6)

Arguments

param_rxt	Output of the function calc_r_x0, which produces a list containing parameters that are necessary to calculate c_closure. These parameters are r, the growth rate, x0, the initial LAI value, and t0, the initial date and the associated dates
x1	LAI value at which 90% canopy closure is reached. It is fixed to 1.3 for sugar beet.
k	carrying capacity, which is the maximum LAI that can be attained. This value can be cultivar-dependent. The default is fixed to 6

Details

Calculates canopy closure dates from LAI and growth rate parameters

Value

c_closure date at which 90% canopy closure is reached at each location.

Examples

img_dir <- system.file("extdata", "uav_img",package = "cercospoRa")
epidemic_onset_param <-
  read_sb_growth_parameter(img_files = list.files(img_dir,pattern = "tif",
                                                  full.names = TRUE),
                           img_dates = as.POSIXct(
                             c("2022-06-14","2022-06-28"),tz = "UTC"),
                           target_res = 10)
param_rxt <- calc_r_x0(epidemic_onset_param,
                       min_r = 0.02,
                       max_r = 0.05,
                       k = 6)
c_closure <- calc_c_closure(param_rxt,
                            x1 = 1.3,
                            k=6 )

cercospoRa documentation built on April 12, 2025, 1:28 a.m.