Distributed fitting with cevcmm

In cevcmm: Communication-Efficient Varying Coefficient Mixed-Effects Models

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set.seed(23)

When you need this

Three scenarios call for the distributed API:

1. Data lives on $K$ different machines — privacy or governance constraints prevent pooling, but each site can publish a small summary.
2. Data is on one machine but doesn't fit in memory — process chunk by chunk and accumulate.
3. Streaming data — new batches arrive over time and refitting from scratch is expensive.

All three are solved with the same primitive: each chunk produces a vcmm_ss summary; summaries are additive; the fit is computed from the aggregate.

The math guarantee

Theorem 1 of Jalili and Lin (2025): partition the data into $K$ chunks, compute a sufficient-statistics summary on each chunk, sum the summaries, and fit. The result is bit-equivalent (up to BLAS summation noise) to fitting on the pooled data. The summaries lose no information — they are the sufficient statistics for the VCMM likelihood.

The summary on chunk $k$ stores $$ \bigl(a_k,\; b_k,\; C_k,\; (Z^\top Z)_k,\; (Z^\top y)_k,\; (X^\top Z)_k,\; n_k\bigr) $$ where $a = y^\top y$, $b = X^\top y$, $C = X^\top X$. Adding summaries across chunks is element-wise addition; the aggregate is the same as the single summary you would have computed on the pooled data.

Setup

library(cevcmm)

Simulate

A modest example: $N = 1200$ observations, $K = 1$ varying covariate, $q = 4$ independent random effects. Then we'll split it into 3 nodes.

set.seed(23)
N <- 1200L
q <- 4L

t <- runif(N)
x <- runif(N)
Z <- matrix(rnorm(N * q), N, q)

beta_1_fun <- function(u) sin(2 * pi * u)
alpha_true <- rnorm(q, sd = 0.5)
y <- 2 + beta_1_fun(t) * x + as.vector(Z %*% alpha_true) +
     rnorm(N, sd = 0.5)

Pattern 1 — list of node summaries

This is the "data on $K$ machines" case. Each node:

1. computes the same spline design matrix on its own slice of $t$ and $X$,
2. calls node_summary() on its slice,
3. ships the resulting vcmm_ss object (small — a few KB regardless of $n_k$) to the central node.

The central node sums the summaries and calls fit_from_summaries().

# Assign each observation to one of 3 nodes
node_id <- sample.int(3L, N, replace = TRUE)
splits  <- split(seq_len(N), node_id)
lengths(splits)

Build the spline design once. (In a real deployment, each node would construct its piece of the design locally using the same n_basis, degree, and knot placement — the package handles this automatically as long as the inputs agree.)

design <- build_vcmm_design(X = x, t = t)
X_d    <- design$X_design
# N rows x p columns; p = intercept + spline-basis coefficients,
# with n_basis auto-picked from the sample size.
dim(X_d)

Each node produces a summary:

summaries <- lapply(splits, function(idx) {
  node_summary(y[idx], X_d[idx, , drop = FALSE], Z[idx, , drop = FALSE])
})
summaries[[1]]

The size of each summary is independent of $n_k$:

object.size(summaries[[1]])
object.size(y[splits[[1]]]) + object.size(X_d[splits[[1]], ])

Now fit from the summaries — pass the list directly:

ctrl <- vcmm_control(sigma_eps       = 0.5,
                     sigma_alpha     = 0.5,
                     update_variance = TRUE)

fit_dist <- fit_from_summaries(summaries,
                               penalty = design$penalty,
                               control = ctrl,
                               method  = "ss",
                               re_cov  = "diag")
fit_dist

Verify bit-equivalence against pooled fitting

fit_pooled <- vcmm(y, X = x, Z = Z, t = t,
                   method = "ss", re_cov = "diag",
                   control = ctrl)

# beta estimates
max(abs(fit_pooled$beta - fit_dist$beta))

# alpha estimates
max(abs(fit_pooled$alpha - fit_dist$alpha))

# variance components
all.equal(fit_pooled$sigma_eps,   fit_dist$sigma_eps)
all.equal(fit_pooled$sigma_alpha, fit_dist$sigma_alpha)

The maximum coefficient difference sits at the BLAS summation-noise floor — typically near machine epsilon ($\sim 10^{-15}$). The distributed fit is the pooled fit; only the path that produced it differs.

Pattern 2 — streaming accumulator

When you have many small chunks and don't want to keep them all in memory, use the accumulator instead of a list. The accumulator stores a running sum of the sufficient statistics; chunks can be incorporated and discarded as they arrive.

p <- ncol(X_d)
acc <- init_accumulator(p = p, q = q)

# Pretend chunks arrive one at a time
for (k in seq_along(splits)) {
  idx <- splits[[k]]
  ss_k <- compute_sufficient_stats(y[idx],
                                   X_d[idx, , drop = FALSE],
                                   Z[idx, , drop = FALSE])
  acc <- accumulate_stats(acc, ss_k)
}
acc

Fit from the accumulator — same call signature:

fit_acc <- fit_from_summaries(acc, penalty = design$penalty,
                              control = ctrl, method = "ss", re_cov = "diag")

# Same answer as Pattern 1
max(abs(fit_acc$beta - fit_dist$beta))

Identifiability for OD designs

When rowSums(Z) is constant — for example, a row of $Z$ has exactly one "origin" indicator and one "destination" indicator, so each row sums to $s = 2$ — the model has a one-dimensional identifiability redundancy. For any scalar $c$, replacing $$ \alpha \;\mapsto\; \alpha + c\mathbf{1}, \qquad \beta_0 \;\mapsto\; \beta_0 - c\,s $$ leaves $Z\alpha + \beta_0\mathbf{1}$ — and hence the likelihood — unchanged. vcmm() detects this automatically by inspecting the raw $Z$ matrix and applies a centering shift so that $\sum_j \hat\alpha_j = 0$.

fit_from_summaries() doesn't auto-detect the row-sum from the sufficient statistics, so you supply it explicitly via rowsum_constant:

# Skeleton — see vignette("od-migration") for a complete runnable example.
# G and Sigma_spatial come from the OD setup (number of regions and an
# initial spatial covariance matrix).
fit_dist_od <- fit_from_summaries(
  summaries, penalty = design$penalty, control = ctrl,
  method = "ss", re_cov = "kronecker",
  n_groups           = G,              # number of OD regions
  Sigma_spatial_init = Sigma_spatial,  # G x G initial spatial covariance
  rowsum_constant    = 2               # matches what vcmm() applies internally
)

Without rowsum_constant, the distributed fit's $\hat\beta_0$ and $\hat\alpha$ differ from the pooled fit's by exactly the centering shift. The fits are the same up to the redundancy; only the choice of representative within the equivalence class differs.

See vignette("od-migration", package = "cevcmm") for a full OD example.

Where to go next

• OD migration with Kronecker covariance: vignette("od-migration", package = "cevcmm").
• Basic single-machine usage: vignette("getting-started", package = "cevcmm").

Reference

Jalili, L. and Lin, L.-H. (2025). Scalable and Communication-Efficient Varying Coefficient Mixed Effect Models: Methodology, Theory, and Applications. arXiv:2511.12732; under review at Journal of the American Statistical Association.

cevcmm documentation built on July 24, 2026, 5:07 p.m.