cherry: Multiple Testing Methods for Exploratory Research

Provides an alternative approach to multiple testing by calculating a simultaneous upper confidence bounds for the number of true null hypotheses among any subset of the hypotheses of interest. Some of the functions in this package are optionally enhanced by the 'gurobi' software and its accompanying R package. For their installation, please follow the instructions at www.gurobi.com and http://www.gurobi.com/documentation, respectively.

Author
Jelle Goeman, Aldo Solari, Rosa Meijer
Date of publication
2015-06-22 19:53:18
Maintainer
Jelle Goeman <jelle.goeman@radboudumc.nl>
License
GPL (>= 2)
Version
0.6-11

View on CRAN

Man pages

adjusted
Adjusted p-values for the number of true hypotheses.
closed
Closed Testing for Exploratory Research
closure-class
Class "closure" for storing the result of the closed testing...
construct
Constructing a DAG.
DAG-class
Class "DAG" for storing the result of the DAG multiple...
DAGmethod
Testing of hypotheses, forming a DAG.
DAGpick
Confidence limits for the number of false hypotheses in a...
DAGstructure-class
Class "DAGstructure" for storing the result of the construct...
hommel-class
Class "hommel" for storing the adjusted p-values of Hommel's...
hommelFast
Calculates adjusted p-values of Hommel's method efficiently.
NAEP
National Assessment of Educational Progress (NAEP) p-values
region-class
Class "region" for storing the result of the region procedure
regionmethod
Testing of all possible region hypotheses
regionpick
Confidence limits for the number of false hypotheses in a...
regionplots
Visualizing of the region hypotheses that could be rejected.
select
Confidence limits for the number of true hypotheses.
shortcuts
Confidence limits for the number of true hypotheses, with...
structuredHolm
Testing of hypotheses, forming a DAG, by using a variant of...

Files in this package

cherry
cherry/inst
cherry/inst/CITATION
cherry/inst/doc
cherry/inst/doc/cherry.R
cherry/inst/doc/cherry.pdf
cherry/inst/doc/cherry.Rnw
cherry/NAMESPACE
cherry/data
cherry/data/NAEP.RData
cherry/R
cherry/R/shortcuts.R
cherry/R/DAGstructure.R
cherry/R/regionmethod.R
cherry/R/DAGmethod.R
cherry/R/structuredHolm.R
cherry/R/Meinshausen.R
cherry/R/closed.R
cherry/vignettes
cherry/vignettes/cherrypackage.bib
cherry/vignettes/cherry.Rnw
cherry/MD5
cherry/build
cherry/build/vignette.rds
cherry/DESCRIPTION
cherry/ChangeLog
cherry/man
cherry/man/hommelFast.Rd
cherry/man/regionmethod.Rd
cherry/man/DAGmethod.Rd
cherry/man/closed.Rd
cherry/man/DAG-class.Rd
cherry/man/NAEP.Rd
cherry/man/DAGpick.Rd
cherry/man/region-class.Rd
cherry/man/adjusted.Rd
cherry/man/structuredHolm.Rd
cherry/man/DAGstructure-class.Rd
cherry/man/regionplots.Rd
cherry/man/shortcuts.Rd
cherry/man/construct.Rd
cherry/man/hommel-class.Rd
cherry/man/regionpick.Rd
cherry/man/select.Rd
cherry/man/closure-class.Rd