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tests/testthat/_snaps/cmt01a.md
In chevron: Standard TLGs for Clinical Trials Reporting
cmt01a functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
ATC Level 2 Text A: Drug X B: Placebo C: Combination
Other Treatment (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
ATCCLAS2 A
Total number of patients with at least one treatment 10 (66.7%) 11 (73.3%) 12 (80.0%)
Total number of treatments 15 21 28
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
medname A_2/3 5 (33.3%) 6 (40.0%) 7 (46.7%)
medname A_1/3 4 (26.7%) 3 (20.0%) 8 (53.3%)
ATCCLAS2 A p2
Total number of patients with at least one treatment 5 (33.3%) 8 (53.3%) 6 (40.0%)
Total number of treatments 6 8 8
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
ATCCLAS2 B
Total number of patients with at least one treatment 12 (80.0%) 10 (66.7%) 14 (93.3%)
Total number of treatments 30 30 52
medname B_3/4 8 (53.3%) 6 (40.0%) 8 (53.3%)
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
medname B_4/4 4 (26.7%) 5 (33.3%) 8 (53.3%)
ATCCLAS2 B p2
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
Total number of treatments 18 17 25
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 B p3
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
Total number of treatments 18 17 25
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 C
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
Total number of treatments 13 8 19
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p2
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
Total number of treatments 13 8 19
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p3
Total number of patients with at least one treatment 4 (26.7%) 5 (33.3%) 7 (46.7%)
Total number of treatments 5 5 12
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
cmt01a functions with custom argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
ATC Level 2 Text A: Drug X B: Placebo C: Combination
Other Treatment (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
ATCCLAS2 B
Total number of patients with at least one treatment 12 (80.0%) 10 (66.7%) 14 (93.3%)
medname B_3/4 8 (53.3%) 6 (40.0%) 8 (53.3%)
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
medname B_4/4 4 (26.7%) 5 (33.3%) 8 (53.3%)
ATCCLAS2 A
Total number of patients with at least one treatment 10 (66.7%) 11 (73.3%) 12 (80.0%)
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
medname A_2/3 5 (33.3%) 6 (40.0%) 7 (46.7%)
medname A_1/3 4 (26.7%) 3 (20.0%) 8 (53.3%)
ATCCLAS2 B p2
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 B p3
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 C
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p2
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 A p2
Total number of patients with at least one treatment 5 (33.3%) 8 (53.3%) 6 (40.0%)
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
ATCCLAS2 C p3
Total number of patients with at least one treatment 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
cmt01a can handle all NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
ATC Level 2 Text A: Drug X B: Placebo C: Combination
Other Treatment (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
No Coding Available
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
No Coding Available 13 (86.7%) 14 (93.3%) 15 (100%)
cmt01a can handle some NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
ATC Level 2 Text A: Drug X B: Placebo C: Combination
Other Treatment (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
ATCCLAS2 A
Total number of patients with at least one treatment 10 (66.7%) 11 (73.3%) 12 (80.0%)
Total number of treatments 15 21 28
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
medname A_2/3 5 (33.3%) 6 (40.0%) 7 (46.7%)
medname A_1/3 4 (26.7%) 3 (20.0%) 8 (53.3%)
ATCCLAS2 A p2
Total number of patients with at least one treatment 5 (33.3%) 8 (53.3%) 6 (40.0%)
Total number of treatments 6 8 8
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
ATCCLAS2 B
Total number of patients with at least one treatment 11 (73.3%) 10 (66.7%) 14 (93.3%)
Total number of treatments 29 30 52
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_3/4 7 (46.7%) 6 (40.0%) 8 (53.3%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
medname B_4/4 4 (26.7%) 5 (33.3%) 8 (53.3%)
ATCCLAS2 B p2
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
Total number of treatments 18 17 25
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 B p3
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
Total number of treatments 18 17 25
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 C
Total number of patients with at least one treatment 8 (53.3%) 7 (46.7%) 12 (80.0%)
Total number of treatments 12 8 19
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 5 (33.3%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p2
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
Total number of treatments 13 8 19
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p3
Total number of patients with at least one treatment 4 (26.7%) 5 (33.3%) 7 (46.7%)
Total number of treatments 5 5 12
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
No Coding Available
Total number of patients with at least one treatment 1 (6.7%) 0 0
Total number of treatments 2 0 0
No Coding Available 1 (6.7%) 0 0
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cmt01a functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
ATC Level 2 Text A: Drug X B: Placebo C: Combination
Other Treatment (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
ATCCLAS2 A
Total number of patients with at least one treatment 10 (66.7%) 11 (73.3%) 12 (80.0%)
Total number of treatments 15 21 28
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
medname A_2/3 5 (33.3%) 6 (40.0%) 7 (46.7%)
medname A_1/3 4 (26.7%) 3 (20.0%) 8 (53.3%)
ATCCLAS2 A p2
Total number of patients with at least one treatment 5 (33.3%) 8 (53.3%) 6 (40.0%)
Total number of treatments 6 8 8
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
ATCCLAS2 B
Total number of patients with at least one treatment 12 (80.0%) 10 (66.7%) 14 (93.3%)
Total number of treatments 30 30 52
medname B_3/4 8 (53.3%) 6 (40.0%) 8 (53.3%)
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
medname B_4/4 4 (26.7%) 5 (33.3%) 8 (53.3%)
ATCCLAS2 B p2
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
Total number of treatments 18 17 25
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 B p3
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
Total number of treatments 18 17 25
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 C
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
Total number of treatments 13 8 19
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p2
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
Total number of treatments 13 8 19
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p3
Total number of patients with at least one treatment 4 (26.7%) 5 (33.3%) 7 (46.7%)
Total number of treatments 5 5 12
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
cmt01a functions with custom argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
ATC Level 2 Text A: Drug X B: Placebo C: Combination
Other Treatment (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
ATCCLAS2 B
Total number of patients with at least one treatment 12 (80.0%) 10 (66.7%) 14 (93.3%)
medname B_3/4 8 (53.3%) 6 (40.0%) 8 (53.3%)
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
medname B_4/4 4 (26.7%) 5 (33.3%) 8 (53.3%)
ATCCLAS2 A
Total number of patients with at least one treatment 10 (66.7%) 11 (73.3%) 12 (80.0%)
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
medname A_2/3 5 (33.3%) 6 (40.0%) 7 (46.7%)
medname A_1/3 4 (26.7%) 3 (20.0%) 8 (53.3%)
ATCCLAS2 B p2
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 B p3
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 C
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p2
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 A p2
Total number of patients with at least one treatment 5 (33.3%) 8 (53.3%) 6 (40.0%)
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
ATCCLAS2 C p3
Total number of patients with at least one treatment 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
cmt01a can handle all NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
ATC Level 2 Text A: Drug X B: Placebo C: Combination
Other Treatment (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
No Coding Available
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
No Coding Available 13 (86.7%) 14 (93.3%) 15 (100%)
cmt01a can handle some NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
ATC Level 2 Text A: Drug X B: Placebo C: Combination
Other Treatment (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one treatment 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of treatments 58 59 99
ATCCLAS2 A
Total number of patients with at least one treatment 10 (66.7%) 11 (73.3%) 12 (80.0%)
Total number of treatments 15 21 28
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
medname A_2/3 5 (33.3%) 6 (40.0%) 7 (46.7%)
medname A_1/3 4 (26.7%) 3 (20.0%) 8 (53.3%)
ATCCLAS2 A p2
Total number of patients with at least one treatment 5 (33.3%) 8 (53.3%) 6 (40.0%)
Total number of treatments 6 8 8
medname A_3/3 5 (33.3%) 8 (53.3%) 6 (40.0%)
ATCCLAS2 B
Total number of patients with at least one treatment 11 (73.3%) 10 (66.7%) 14 (93.3%)
Total number of treatments 29 30 52
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_3/4 7 (46.7%) 6 (40.0%) 8 (53.3%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
medname B_4/4 4 (26.7%) 5 (33.3%) 8 (53.3%)
ATCCLAS2 B p2
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
Total number of treatments 18 17 25
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 B p3
Total number of patients with at least one treatment 10 (66.7%) 8 (53.3%) 12 (80.0%)
Total number of treatments 18 17 25
medname B_2/4 6 (40.0%) 5 (33.3%) 10 (66.7%)
medname B_1/4 7 (46.7%) 6 (40.0%) 6 (40.0%)
ATCCLAS2 C
Total number of patients with at least one treatment 8 (53.3%) 7 (46.7%) 12 (80.0%)
Total number of treatments 12 8 19
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 5 (33.3%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p2
Total number of patients with at least one treatment 9 (60.0%) 7 (46.7%) 12 (80.0%)
Total number of treatments 13 8 19
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
medname C_1/2 6 (40.0%) 2 (13.3%) 6 (40.0%)
ATCCLAS2 C p3
Total number of patients with at least one treatment 4 (26.7%) 5 (33.3%) 7 (46.7%)
Total number of treatments 5 5 12
medname C_2/2 4 (26.7%) 5 (33.3%) 7 (46.7%)
No Coding Available
Total number of patients with at least one treatment 1 (6.7%) 0 0
Total number of treatments 2 0 0
No Coding Available 1 (6.7%) 0 0
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