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tests/testthat/_snaps/egt05_qtcat.md
In chevron: Standard TLGs for Clinical Trials Reporting
egt05_qtcat functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter
Analysis Visit A: Drug X B: Placebo C: Combination
Category (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————
QT Duration
BASELINE
Value at Visit
n 15 15 15
<=450 msec 13 (86.7%) 15 (100%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 0 0
>480 to <=500 msec 0 0 1 (6.7%)
>500 msec 1 (6.7%) 0 1 (6.7%)
WEEK 1 DAY 8
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 9 (60.0%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 1 (6.7%) 1 (6.7%)
>480 to <=500 msec 1 (6.7%) 3 (20.0%) 1 (6.7%)
>500 msec 1 (6.7%) 2 (13.3%) 0
Change from Baseline
n 15 15 15
<=30 msec 7 (46.7%) 6 (40.0%) 9 (60.0%)
>30 to <=60 msec 2 (13.3%) 1 (6.7%) 1 (6.7%)
>60 msec 6 (40.0%) 8 (53.3%) 5 (33.3%)
WEEK 2 DAY 15
Value at Visit
n 15 15 15
<=450 msec 11 (73.3%) 14 (93.3%) 12 (80.0%)
>450 to <=480 msec 2 (13.3%) 0 2 (13.3%)
>480 to <=500 msec 1 (6.7%) 0 1 (6.7%)
>500 msec 1 (6.7%) 1 (6.7%) 0
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 12 (80.0%) 7 (46.7%)
>30 to <=60 msec 2 (13.3%) 0 3 (20.0%)
>60 msec 4 (26.7%) 3 (20.0%) 5 (33.3%)
WEEK 3 DAY 22
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 12 (80.0%) 12 (80.0%)
>450 to <=480 msec 3 (20.0%) 1 (6.7%) 1 (6.7%)
>500 msec 0 2 (13.3%) 2 (13.3%)
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 11 (73.3%) 9 (60.0%)
>30 to <=60 msec 1 (6.7%) 1 (6.7%) 0
>60 msec 5 (33.3%) 3 (20.0%) 6 (40.0%)
WEEK 4 DAY 29
Value at Visit
n 15 15 15
<=450 msec 14 (93.3%) 12 (80.0%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 1 (6.7%) 1 (6.7%)
>480 to <=500 msec 0 0 1 (6.7%)
>500 msec 0 2 (13.3%) 0
Change from Baseline
n 15 15 15
<=30 msec 6 (40.0%) 9 (60.0%) 9 (60.0%)
>30 to <=60 msec 2 (13.3%) 1 (6.7%) 2 (13.3%)
>60 msec 7 (46.7%) 5 (33.3%) 4 (26.7%)
WEEK 5 DAY 36
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 15 (100%) 15 (100%)
>450 to <=480 msec 2 (13.3%) 0 0
>500 msec 1 (6.7%) 0 0
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 11 (73.3%) 9 (60.0%)
>30 to <=60 msec 0 3 (20.0%) 2 (13.3%)
>60 msec 6 (40.0%) 1 (6.7%) 4 (26.7%)
egt05_qtcat can handle some NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter
Analysis Visit A: Drug X B: Placebo C: Combination
Category (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————
QT Duration
BASELINE
Value at Visit
n 14 15 15
<=450 msec 13 (92.9%) 15 (100%) 13 (86.7%)
>450 to <=480 msec 1 (7.1%) 0 0
>480 to <=500 msec 0 0 1 (6.7%)
>500 msec 0 0 1 (6.7%)
WEEK 1 DAY 8
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 9 (60.0%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 1 (6.7%) 1 (6.7%)
>480 to <=500 msec 1 (6.7%) 3 (20.0%) 1 (6.7%)
>500 msec 1 (6.7%) 2 (13.3%) 0
Change from Baseline
n 15 15 15
<=30 msec 7 (46.7%) 6 (40.0%) 9 (60.0%)
>30 to <=60 msec 2 (13.3%) 1 (6.7%) 1 (6.7%)
>60 msec 6 (40.0%) 8 (53.3%) 5 (33.3%)
WEEK 2 DAY 15
Value at Visit
n 15 15 15
<=450 msec 11 (73.3%) 14 (93.3%) 12 (80.0%)
>450 to <=480 msec 2 (13.3%) 0 2 (13.3%)
>480 to <=500 msec 1 (6.7%) 0 1 (6.7%)
>500 msec 1 (6.7%) 1 (6.7%) 0
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 12 (80.0%) 7 (46.7%)
>30 to <=60 msec 2 (13.3%) 0 3 (20.0%)
>60 msec 4 (26.7%) 3 (20.0%) 5 (33.3%)
WEEK 3 DAY 22
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 12 (80.0%) 12 (80.0%)
>450 to <=480 msec 3 (20.0%) 1 (6.7%) 1 (6.7%)
>500 msec 0 2 (13.3%) 2 (13.3%)
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 11 (73.3%) 9 (60.0%)
>30 to <=60 msec 1 (6.7%) 1 (6.7%) 0
>60 msec 5 (33.3%) 3 (20.0%) 6 (40.0%)
WEEK 4 DAY 29
Value at Visit
n 15 15 15
<=450 msec 14 (93.3%) 12 (80.0%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 1 (6.7%) 1 (6.7%)
>480 to <=500 msec 0 0 1 (6.7%)
>500 msec 0 2 (13.3%) 0
Change from Baseline
n 15 15 15
<=30 msec 6 (40.0%) 9 (60.0%) 9 (60.0%)
>30 to <=60 msec 2 (13.3%) 1 (6.7%) 2 (13.3%)
>60 msec 7 (46.7%) 5 (33.3%) 4 (26.7%)
WEEK 5 DAY 36
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 15 (100%) 15 (100%)
>450 to <=480 msec 2 (13.3%) 0 0
>500 msec 1 (6.7%) 0 0
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 11 (73.3%) 9 (60.0%)
>30 to <=60 msec 0 3 (20.0%) 2 (13.3%)
>60 msec 6 (40.0%) 1 (6.7%) 4 (26.7%)
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egt05_qtcat functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter
Analysis Visit A: Drug X B: Placebo C: Combination
Category (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————
QT Duration
BASELINE
Value at Visit
n 15 15 15
<=450 msec 13 (86.7%) 15 (100%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 0 0
>480 to <=500 msec 0 0 1 (6.7%)
>500 msec 1 (6.7%) 0 1 (6.7%)
WEEK 1 DAY 8
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 9 (60.0%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 1 (6.7%) 1 (6.7%)
>480 to <=500 msec 1 (6.7%) 3 (20.0%) 1 (6.7%)
>500 msec 1 (6.7%) 2 (13.3%) 0
Change from Baseline
n 15 15 15
<=30 msec 7 (46.7%) 6 (40.0%) 9 (60.0%)
>30 to <=60 msec 2 (13.3%) 1 (6.7%) 1 (6.7%)
>60 msec 6 (40.0%) 8 (53.3%) 5 (33.3%)
WEEK 2 DAY 15
Value at Visit
n 15 15 15
<=450 msec 11 (73.3%) 14 (93.3%) 12 (80.0%)
>450 to <=480 msec 2 (13.3%) 0 2 (13.3%)
>480 to <=500 msec 1 (6.7%) 0 1 (6.7%)
>500 msec 1 (6.7%) 1 (6.7%) 0
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 12 (80.0%) 7 (46.7%)
>30 to <=60 msec 2 (13.3%) 0 3 (20.0%)
>60 msec 4 (26.7%) 3 (20.0%) 5 (33.3%)
WEEK 3 DAY 22
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 12 (80.0%) 12 (80.0%)
>450 to <=480 msec 3 (20.0%) 1 (6.7%) 1 (6.7%)
>500 msec 0 2 (13.3%) 2 (13.3%)
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 11 (73.3%) 9 (60.0%)
>30 to <=60 msec 1 (6.7%) 1 (6.7%) 0
>60 msec 5 (33.3%) 3 (20.0%) 6 (40.0%)
WEEK 4 DAY 29
Value at Visit
n 15 15 15
<=450 msec 14 (93.3%) 12 (80.0%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 1 (6.7%) 1 (6.7%)
>480 to <=500 msec 0 0 1 (6.7%)
>500 msec 0 2 (13.3%) 0
Change from Baseline
n 15 15 15
<=30 msec 6 (40.0%) 9 (60.0%) 9 (60.0%)
>30 to <=60 msec 2 (13.3%) 1 (6.7%) 2 (13.3%)
>60 msec 7 (46.7%) 5 (33.3%) 4 (26.7%)
WEEK 5 DAY 36
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 15 (100%) 15 (100%)
>450 to <=480 msec 2 (13.3%) 0 0
>500 msec 1 (6.7%) 0 0
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 11 (73.3%) 9 (60.0%)
>30 to <=60 msec 0 3 (20.0%) 2 (13.3%)
>60 msec 6 (40.0%) 1 (6.7%) 4 (26.7%)
egt05_qtcat can handle some NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter
Analysis Visit A: Drug X B: Placebo C: Combination
Category (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————
QT Duration
BASELINE
Value at Visit
n 14 15 15
<=450 msec 13 (92.9%) 15 (100%) 13 (86.7%)
>450 to <=480 msec 1 (7.1%) 0 0
>480 to <=500 msec 0 0 1 (6.7%)
>500 msec 0 0 1 (6.7%)
WEEK 1 DAY 8
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 9 (60.0%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 1 (6.7%) 1 (6.7%)
>480 to <=500 msec 1 (6.7%) 3 (20.0%) 1 (6.7%)
>500 msec 1 (6.7%) 2 (13.3%) 0
Change from Baseline
n 15 15 15
<=30 msec 7 (46.7%) 6 (40.0%) 9 (60.0%)
>30 to <=60 msec 2 (13.3%) 1 (6.7%) 1 (6.7%)
>60 msec 6 (40.0%) 8 (53.3%) 5 (33.3%)
WEEK 2 DAY 15
Value at Visit
n 15 15 15
<=450 msec 11 (73.3%) 14 (93.3%) 12 (80.0%)
>450 to <=480 msec 2 (13.3%) 0 2 (13.3%)
>480 to <=500 msec 1 (6.7%) 0 1 (6.7%)
>500 msec 1 (6.7%) 1 (6.7%) 0
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 12 (80.0%) 7 (46.7%)
>30 to <=60 msec 2 (13.3%) 0 3 (20.0%)
>60 msec 4 (26.7%) 3 (20.0%) 5 (33.3%)
WEEK 3 DAY 22
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 12 (80.0%) 12 (80.0%)
>450 to <=480 msec 3 (20.0%) 1 (6.7%) 1 (6.7%)
>500 msec 0 2 (13.3%) 2 (13.3%)
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 11 (73.3%) 9 (60.0%)
>30 to <=60 msec 1 (6.7%) 1 (6.7%) 0
>60 msec 5 (33.3%) 3 (20.0%) 6 (40.0%)
WEEK 4 DAY 29
Value at Visit
n 15 15 15
<=450 msec 14 (93.3%) 12 (80.0%) 13 (86.7%)
>450 to <=480 msec 1 (6.7%) 1 (6.7%) 1 (6.7%)
>480 to <=500 msec 0 0 1 (6.7%)
>500 msec 0 2 (13.3%) 0
Change from Baseline
n 15 15 15
<=30 msec 6 (40.0%) 9 (60.0%) 9 (60.0%)
>30 to <=60 msec 2 (13.3%) 1 (6.7%) 2 (13.3%)
>60 msec 7 (46.7%) 5 (33.3%) 4 (26.7%)
WEEK 5 DAY 36
Value at Visit
n 15 15 15
<=450 msec 12 (80.0%) 15 (100%) 15 (100%)
>450 to <=480 msec 2 (13.3%) 0 0
>500 msec 1 (6.7%) 0 0
Change from Baseline
n 15 15 15
<=30 msec 9 (60.0%) 11 (73.3%) 9 (60.0%)
>30 to <=60 msec 0 3 (20.0%) 2 (13.3%)
>60 msec 6 (40.0%) 1 (6.7%) 4 (26.7%)
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