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tests/testthat/_snaps/lbt05.md
In chevron: Standard TLGs for Clinical Trials Reporting
lbt05 functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
Code
cat(export_as_txt(res_prune, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
lbt05 can handle some NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
lbt05 works with missing levels
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 0 0 0
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 0 0 0
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
map argument works as expected
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
incomplete map argument works as expected
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
prune_0 keeps the Any Abnormaility row
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
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lbt05 functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
Code
cat(export_as_txt(res_prune, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
lbt05 can handle some NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
lbt05 works with missing levels
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 0 0 0
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 0 0 0
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
map argument works as expected
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
incomplete map argument works as expected
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Single, not last 0 0 0
Last or replicated 0 0 0
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
prune_0 keeps the Any Abnormaility row
Code
cat(export_as_txt(res, lpp = 100))
Output
Laboratory Test A: Drug X B: Placebo C: Combination
Direction of Abnormality (N=15) (N=15) (N=15)
——————————————————————————————————————————————————————————————————————————————————
Alanine Aminotransferase Measurement (n) 15 14 14
Low
Single, not last 1 (6.7%) 0 4 (28.6%)
Last or replicated 5 (33.3%) 4 (28.6%) 4 (28.6%)
Any Abnormality 6 (40.0%) 4 (28.6%) 8 (57.1%)
High
Any Abnormality 0 0 0
C-Reactive Protein Measurement (n) 15 15 15
Low
Single, not last 4 (26.7%) 0 3 (20.0%)
Last or replicated 3 (20.0%) 5 (33.3%) 6 (40.0%)
Any Abnormality 7 (46.7%) 5 (33.3%) 9 (60.0%)
High
Single, not last 1 (6.7%) 3 (20.0%) 0
Last or replicated 4 (26.7%) 3 (20.0%) 6 (40.0%)
Any Abnormality 5 (33.3%) 6 (40.0%) 6 (40.0%)
Immunoglobulin A Measurement (n) 13 14 14
Low
Any Abnormality 0 0 0
High
Single, not last 6 (46.2%) 1 (7.1%) 2 (14.3%)
Last or replicated 3 (23.1%) 4 (28.6%) 3 (21.4%)
Any Abnormality 9 (69.2%) 5 (35.7%) 5 (35.7%)
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