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tests/testthat/_snaps/lbt14.md
In chevron: Standard TLGs for Clinical Trials Reporting
lbt14 functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
lbt14 functions with default argument value return expected result with test data when direction = high
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not High 15 15 15
Not High 15 (100%) 15 (100%) 15 (100%)
lbt14 functions with gr_missing = excl return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
lbt14 functions with gr_missing = gr_0 return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
lbt14 can handle all NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
BTOXGR A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Missing 15 15 15
Missing 15 (100%) 15 (100%) 15 (100%)
lbt14 can handle some NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
BTOXGR A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 12
Not Low 5 (41.7%) 8 (66.7%) 4 (33.3%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 0
3 0 1 (8.3%) 4 (33.3%)
4 2 (16.7%) 2 (16.7%) 2 (16.7%)
Missing 0 0 2 (16.7%)
1 1 2 0
Not Low 0 1 (50.0%) 0
Missing 1 (100%) 1 (50.0%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Missing 0 0 2
Not Low 0 0 1 (50.0%)
3 0 0 1 (50.0%)
lbt14 can accept different gr_missing
Code
cat(export_as_txt(res1, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Code
cat(export_as_txt(res2, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Code
cat(export_as_txt(res3, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
lbt14 can handle all NA values with direction = high
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
BTOXGR A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Missing 15 15 15
Missing 15 (100%) 15 (100%) 15 (100%)
lbt14 can handle some NA values with direction = high
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
————————————————————————————————————————————————————————————————————————————————
BTOXGR A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
————————————————————————————————————————————————————————————————————————————————
Not High 14 15 13
Not High 13 (92.9%) 14 (93.3%) 12 (92.3%)
Missing 1 (7.1%) 1 (6.7%) 1 (7.7%)
Missing 1 0 2
Not High 1 (100%) 0 2 (100%)
lbt14 can accept different gr_missing with direction = high
Code
cat(export_as_txt(res1, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not High 15 15 15
Not High 15 (100%) 15 (100%) 15 (100%)
Code
cat(export_as_txt(res2, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not High 15 15 15
Not High 15 (100%) 15 (100%) 15 (100%)
Code
cat(export_as_txt(res3, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not High 15 15 15
Not High 15 (100%) 15 (100%) 15 (100%)
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lbt14 functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
lbt14 functions with default argument value return expected result with test data when direction = high
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not High 15 15 15
Not High 15 (100%) 15 (100%) 15 (100%)
lbt14 functions with gr_missing = excl return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
lbt14 functions with gr_missing = gr_0 return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
lbt14 can handle all NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
BTOXGR A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Missing 15 15 15
Missing 15 (100%) 15 (100%) 15 (100%)
lbt14 can handle some NA values
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
BTOXGR A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 12
Not Low 5 (41.7%) 8 (66.7%) 4 (33.3%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 0
3 0 1 (8.3%) 4 (33.3%)
4 2 (16.7%) 2 (16.7%) 2 (16.7%)
Missing 0 0 2 (16.7%)
1 1 2 0
Not Low 0 1 (50.0%) 0
Missing 1 (100%) 1 (50.0%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Missing 0 0 2
Not Low 0 0 1 (50.0%)
3 0 0 1 (50.0%)
lbt14 can accept different gr_missing
Code
cat(export_as_txt(res1, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Code
cat(export_as_txt(res2, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Code
cat(export_as_txt(res3, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
1 1 2 0
Not Low 1 (100%) 2 (100%) 0
2 1 1 0
Not Low 0 1 (100%) 0
4 1 (100%) 0 0
3 1 0 1
3 1 (100%) 0 1 (100%)
Not Low 12 12 14
Not Low 5 (41.7%) 8 (66.7%) 5 (35.7%)
1 3 (25.0%) 0 0
2 2 (16.7%) 1 (8.3%) 1 (7.1%)
3 0 1 (8.3%) 5 (35.7%)
4 2 (16.7%) 2 (16.7%) 3 (21.4%)
lbt14 can handle all NA values with direction = high
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
BTOXGR A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Missing 15 15 15
Missing 15 (100%) 15 (100%) 15 (100%)
lbt14 can handle some NA values with direction = high
Code
cat(export_as_txt(res, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
————————————————————————————————————————————————————————————————————————————————
BTOXGR A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
————————————————————————————————————————————————————————————————————————————————
Not High 14 15 13
Not High 13 (92.9%) 14 (93.3%) 12 (92.3%)
Missing 1 (7.1%) 1 (6.7%) 1 (7.7%)
Missing 1 0 2
Not High 1 (100%) 0 2 (100%)
lbt14 can accept different gr_missing with direction = high
Code
cat(export_as_txt(res1, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not High 15 15 15
Not High 15 (100%) 15 (100%) 15 (100%)
Code
cat(export_as_txt(res2, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not High 15 15 15
Not High 15 (100%) 15 (100%) 15 (100%)
Code
cat(export_as_txt(res3, lpp = 100))
Output
Parameter: Alanine Aminotransferase Measurement
———————————————————————————————————————————————————————————————————————————————
Baseline Toxicity Grade A: Drug X B: Placebo C: Combination
Post-baseline NCI-CTCAE Grade (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————
Not High 15 15 15
Not High 15 (100%) 15 (100%) 15 (100%)
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