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tests/testthat/_snaps/mht01.md
In chevron: Standard TLGs for Clinical Trials Reporting
mht01 functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
MedDRA System Organ Class A: Drug X B: Placebo C: Combination
MedDRA Preferred Term (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one condition 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of conditions 58 59 99
cl A
Total number of patients with at least one condition 7 (46.7%) 6 (40.0%) 10 (66.7%)
Total number of conditions 8 11 16
trm A_2/2 5 (33.3%) 6 (40.0%) 6 (40.0%)
trm A_1/2 3 (20.0%) 1 (6.7%) 6 (40.0%)
cl B
Total number of patients with at least one condition 12 (80.0%) 11 (73.3%) 12 (80.0%)
Total number of conditions 24 21 32
trm B_3/3 8 (53.3%) 6 (40.0%) 7 (46.7%)
trm B_1/3 5 (33.3%) 6 (40.0%) 8 (53.3%)
trm B_2/3 5 (33.3%) 6 (40.0%) 5 (33.3%)
cl C
Total number of patients with at least one condition 8 (53.3%) 6 (40.0%) 11 (73.3%)
Total number of conditions 10 13 22
trm C_2/2 6 (40.0%) 4 (26.7%) 8 (53.3%)
trm C_1/2 4 (26.7%) 4 (26.7%) 5 (33.3%)
cl D
Total number of patients with at least one condition 10 (66.7%) 7 (46.7%) 13 (86.7%)
Total number of conditions 16 14 29
trm D_1/3 4 (26.7%) 4 (26.7%) 7 (46.7%)
trm D_2/3 6 (40.0%) 2 (13.3%) 7 (46.7%)
trm D_3/3 2 (13.3%) 5 (33.3%) 7 (46.7%)
mht01 works
Code
cat(export_as_txt(res, lpp = 100))
Output
MedDRA System Organ Class A: Drug X B: Placebo C: Combination
MedDRA Preferred Term (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one condition 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of conditions 58 59 99
cl A
Total number of patients with at least one condition 7 (46.7%) 6 (40.0%) 10 (66.7%)
Total number of conditions 8 11 16
trm A_2/2 5 (33.3%) 6 (40.0%) 6 (40.0%)
trm A_1/2 3 (20.0%) 1 (6.7%) 6 (40.0%)
cl B
Total number of patients with at least one condition 12 (80.0%) 11 (73.3%) 12 (80.0%)
Total number of conditions 24 21 32
trm B_3/3 8 (53.3%) 6 (40.0%) 7 (46.7%)
trm B_1/3 5 (33.3%) 6 (40.0%) 8 (53.3%)
trm B_2/3 5 (33.3%) 6 (40.0%) 5 (33.3%)
cl C
Total number of patients with at least one condition 8 (53.3%) 6 (40.0%) 11 (73.3%)
Total number of conditions 10 13 22
trm C_2/2 6 (40.0%) 4 (26.7%) 8 (53.3%)
trm C_1/2 4 (26.7%) 4 (26.7%) 5 (33.3%)
cl D
Total number of patients with at least one condition 10 (66.7%) 7 (46.7%) 13 (86.7%)
Total number of conditions 16 14 29
trm D_1/3 4 (26.7%) 4 (26.7%) 7 (46.7%)
trm D_2/3 6 (40.0%) 2 (13.3%) 7 (46.7%)
trm D_3/3 2 (13.3%) 5 (33.3%) 7 (46.7%)
mht01 works on NULL in lbl_mhbodsys or lbl_mhdecod
Code
cat(export_as_txt(res, lpp = 100))
Output
MedDRA System Organ Class A: Drug X B: Placebo C: Combination
MedDRA Preferred Term (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one condition 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of conditions 58 59 99
cl A
Total number of patients with at least one condition 7 (46.7%) 6 (40.0%) 10 (66.7%)
Total number of conditions 8 11 16
trm A_2/2 5 (33.3%) 6 (40.0%) 6 (40.0%)
trm A_1/2 3 (20.0%) 1 (6.7%) 6 (40.0%)
cl B
Total number of patients with at least one condition 12 (80.0%) 11 (73.3%) 12 (80.0%)
Total number of conditions 24 21 32
trm B_3/3 8 (53.3%) 6 (40.0%) 7 (46.7%)
trm B_1/3 5 (33.3%) 6 (40.0%) 8 (53.3%)
trm B_2/3 5 (33.3%) 6 (40.0%) 5 (33.3%)
cl C
Total number of patients with at least one condition 8 (53.3%) 6 (40.0%) 11 (73.3%)
Total number of conditions 10 13 22
trm C_2/2 6 (40.0%) 4 (26.7%) 8 (53.3%)
trm C_1/2 4 (26.7%) 4 (26.7%) 5 (33.3%)
cl D
Total number of patients with at least one condition 10 (66.7%) 7 (46.7%) 13 (86.7%)
Total number of conditions 16 14 29
trm D_1/3 4 (26.7%) 4 (26.7%) 7 (46.7%)
trm D_2/3 6 (40.0%) 2 (13.3%) 7 (46.7%)
trm D_3/3 2 (13.3%) 5 (33.3%) 7 (46.7%)
mht01 works with other row_split_var
Code
cat(export_as_txt(res, lpp = 100))
Output
Sex
Ethnicity A: Drug X B: Placebo C: Combination
MedDRA Preferred Term (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one condition 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of conditions 58 59 99
F
Total number of patients with at least one condition 10 (66.7%) 8 (53.3%) 10 (66.7%)
Total number of conditions 50 41 61
HISPANIC OR LATINO
Total number of patients with at least one condition 1 (6.7%) 0 0
Total number of conditions 5 0 0
trm A_2/2 1 (6.7%) 0 0
trm B_1/3 1 (6.7%) 0 0
trm B_2/3 1 (6.7%) 0 0
trm D_1/3 1 (6.7%) 0 0
NOT HISPANIC OR LATINO
Total number of patients with at least one condition 9 (60.0%) 8 (53.3%) 8 (53.3%)
Total number of conditions 45 41 52
trm B_3/3 8 (53.3%) 4 (26.7%) 4 (26.7%)
trm C_2/2 5 (33.3%) 4 (26.7%) 3 (20.0%)
trm B_1/3 4 (26.7%) 3 (20.0%) 4 (26.7%)
trm A_2/2 3 (20.0%) 5 (33.3%) 2 (13.3%)
trm D_1/3 2 (13.3%) 3 (20.0%) 5 (33.3%)
trm D_3/3 2 (13.3%) 4 (26.7%) 4 (26.7%)
trm B_2/3 2 (13.3%) 4 (26.7%) 2 (13.3%)
trm C_1/2 2 (13.3%) 3 (20.0%) 3 (20.0%)
trm D_2/3 5 (33.3%) 1 (6.7%) 2 (13.3%)
trm A_1/2 3 (20.0%) 1 (6.7%) 3 (20.0%)
NOT REPORTED
Total number of patients with at least one condition 0 0 2 (13.3%)
Total number of conditions 0 0 9
trm D_2/3 0 0 2 (13.3%)
trm A_1/2 0 0 1 (6.7%)
trm A_2/2 0 0 1 (6.7%)
trm B_1/3 0 0 1 (6.7%)
trm C_1/2 0 0 1 (6.7%)
trm C_2/2 0 0 1 (6.7%)
M
Total number of patients with at least one condition 3 (20.0%) 6 (40.0%) 5 (33.3%)
Total number of conditions 8 18 38
HISPANIC OR LATINO
Total number of patients with at least one condition 1 (6.7%) 0 0
Total number of conditions 2 0 0
trm B_2/3 1 (6.7%) 0 0
trm C_1/2 1 (6.7%) 0 0
NOT HISPANIC OR LATINO
Total number of patients with at least one condition 2 (13.3%) 6 (40.0%) 5 (33.3%)
Total number of conditions 6 18 38
trm B_1/3 0 3 (20.0%) 3 (20.0%)
trm B_2/3 1 (6.7%) 2 (13.3%) 3 (20.0%)
trm A_2/2 1 (6.7%) 1 (6.7%) 3 (20.0%)
trm B_3/3 0 2 (13.3%) 3 (20.0%)
trm C_2/2 1 (6.7%) 0 4 (26.7%)
trm D_2/3 1 (6.7%) 1 (6.7%) 3 (20.0%)
trm D_1/3 1 (6.7%) 1 (6.7%) 2 (13.3%)
trm D_3/3 0 1 (6.7%) 3 (20.0%)
trm C_1/2 1 (6.7%) 1 (6.7%) 1 (6.7%)
trm A_1/2 0 0 2 (13.3%)
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mht01 functions with default argument value return expected result with test data
Code
cat(export_as_txt(res, lpp = 100))
Output
MedDRA System Organ Class A: Drug X B: Placebo C: Combination
MedDRA Preferred Term (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one condition 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of conditions 58 59 99
cl A
Total number of patients with at least one condition 7 (46.7%) 6 (40.0%) 10 (66.7%)
Total number of conditions 8 11 16
trm A_2/2 5 (33.3%) 6 (40.0%) 6 (40.0%)
trm A_1/2 3 (20.0%) 1 (6.7%) 6 (40.0%)
cl B
Total number of patients with at least one condition 12 (80.0%) 11 (73.3%) 12 (80.0%)
Total number of conditions 24 21 32
trm B_3/3 8 (53.3%) 6 (40.0%) 7 (46.7%)
trm B_1/3 5 (33.3%) 6 (40.0%) 8 (53.3%)
trm B_2/3 5 (33.3%) 6 (40.0%) 5 (33.3%)
cl C
Total number of patients with at least one condition 8 (53.3%) 6 (40.0%) 11 (73.3%)
Total number of conditions 10 13 22
trm C_2/2 6 (40.0%) 4 (26.7%) 8 (53.3%)
trm C_1/2 4 (26.7%) 4 (26.7%) 5 (33.3%)
cl D
Total number of patients with at least one condition 10 (66.7%) 7 (46.7%) 13 (86.7%)
Total number of conditions 16 14 29
trm D_1/3 4 (26.7%) 4 (26.7%) 7 (46.7%)
trm D_2/3 6 (40.0%) 2 (13.3%) 7 (46.7%)
trm D_3/3 2 (13.3%) 5 (33.3%) 7 (46.7%)
mht01 works
Code
cat(export_as_txt(res, lpp = 100))
Output
MedDRA System Organ Class A: Drug X B: Placebo C: Combination
MedDRA Preferred Term (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one condition 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of conditions 58 59 99
cl A
Total number of patients with at least one condition 7 (46.7%) 6 (40.0%) 10 (66.7%)
Total number of conditions 8 11 16
trm A_2/2 5 (33.3%) 6 (40.0%) 6 (40.0%)
trm A_1/2 3 (20.0%) 1 (6.7%) 6 (40.0%)
cl B
Total number of patients with at least one condition 12 (80.0%) 11 (73.3%) 12 (80.0%)
Total number of conditions 24 21 32
trm B_3/3 8 (53.3%) 6 (40.0%) 7 (46.7%)
trm B_1/3 5 (33.3%) 6 (40.0%) 8 (53.3%)
trm B_2/3 5 (33.3%) 6 (40.0%) 5 (33.3%)
cl C
Total number of patients with at least one condition 8 (53.3%) 6 (40.0%) 11 (73.3%)
Total number of conditions 10 13 22
trm C_2/2 6 (40.0%) 4 (26.7%) 8 (53.3%)
trm C_1/2 4 (26.7%) 4 (26.7%) 5 (33.3%)
cl D
Total number of patients with at least one condition 10 (66.7%) 7 (46.7%) 13 (86.7%)
Total number of conditions 16 14 29
trm D_1/3 4 (26.7%) 4 (26.7%) 7 (46.7%)
trm D_2/3 6 (40.0%) 2 (13.3%) 7 (46.7%)
trm D_3/3 2 (13.3%) 5 (33.3%) 7 (46.7%)
mht01 works on NULL in lbl_mhbodsys or lbl_mhdecod
Code
cat(export_as_txt(res, lpp = 100))
Output
MedDRA System Organ Class A: Drug X B: Placebo C: Combination
MedDRA Preferred Term (N=15) (N=15) (N=15)
—————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one condition 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of conditions 58 59 99
cl A
Total number of patients with at least one condition 7 (46.7%) 6 (40.0%) 10 (66.7%)
Total number of conditions 8 11 16
trm A_2/2 5 (33.3%) 6 (40.0%) 6 (40.0%)
trm A_1/2 3 (20.0%) 1 (6.7%) 6 (40.0%)
cl B
Total number of patients with at least one condition 12 (80.0%) 11 (73.3%) 12 (80.0%)
Total number of conditions 24 21 32
trm B_3/3 8 (53.3%) 6 (40.0%) 7 (46.7%)
trm B_1/3 5 (33.3%) 6 (40.0%) 8 (53.3%)
trm B_2/3 5 (33.3%) 6 (40.0%) 5 (33.3%)
cl C
Total number of patients with at least one condition 8 (53.3%) 6 (40.0%) 11 (73.3%)
Total number of conditions 10 13 22
trm C_2/2 6 (40.0%) 4 (26.7%) 8 (53.3%)
trm C_1/2 4 (26.7%) 4 (26.7%) 5 (33.3%)
cl D
Total number of patients with at least one condition 10 (66.7%) 7 (46.7%) 13 (86.7%)
Total number of conditions 16 14 29
trm D_1/3 4 (26.7%) 4 (26.7%) 7 (46.7%)
trm D_2/3 6 (40.0%) 2 (13.3%) 7 (46.7%)
trm D_3/3 2 (13.3%) 5 (33.3%) 7 (46.7%)
mht01 works with other row_split_var
Code
cat(export_as_txt(res, lpp = 100))
Output
Sex
Ethnicity A: Drug X B: Placebo C: Combination
MedDRA Preferred Term (N=15) (N=15) (N=15)
———————————————————————————————————————————————————————————————————————————————————————————————————
Total number of patients with at least one condition 13 (86.7%) 14 (93.3%) 15 (100%)
Total number of conditions 58 59 99
F
Total number of patients with at least one condition 10 (66.7%) 8 (53.3%) 10 (66.7%)
Total number of conditions 50 41 61
HISPANIC OR LATINO
Total number of patients with at least one condition 1 (6.7%) 0 0
Total number of conditions 5 0 0
trm A_2/2 1 (6.7%) 0 0
trm B_1/3 1 (6.7%) 0 0
trm B_2/3 1 (6.7%) 0 0
trm D_1/3 1 (6.7%) 0 0
NOT HISPANIC OR LATINO
Total number of patients with at least one condition 9 (60.0%) 8 (53.3%) 8 (53.3%)
Total number of conditions 45 41 52
trm B_3/3 8 (53.3%) 4 (26.7%) 4 (26.7%)
trm C_2/2 5 (33.3%) 4 (26.7%) 3 (20.0%)
trm B_1/3 4 (26.7%) 3 (20.0%) 4 (26.7%)
trm A_2/2 3 (20.0%) 5 (33.3%) 2 (13.3%)
trm D_1/3 2 (13.3%) 3 (20.0%) 5 (33.3%)
trm D_3/3 2 (13.3%) 4 (26.7%) 4 (26.7%)
trm B_2/3 2 (13.3%) 4 (26.7%) 2 (13.3%)
trm C_1/2 2 (13.3%) 3 (20.0%) 3 (20.0%)
trm D_2/3 5 (33.3%) 1 (6.7%) 2 (13.3%)
trm A_1/2 3 (20.0%) 1 (6.7%) 3 (20.0%)
NOT REPORTED
Total number of patients with at least one condition 0 0 2 (13.3%)
Total number of conditions 0 0 9
trm D_2/3 0 0 2 (13.3%)
trm A_1/2 0 0 1 (6.7%)
trm A_2/2 0 0 1 (6.7%)
trm B_1/3 0 0 1 (6.7%)
trm C_1/2 0 0 1 (6.7%)
trm C_2/2 0 0 1 (6.7%)
M
Total number of patients with at least one condition 3 (20.0%) 6 (40.0%) 5 (33.3%)
Total number of conditions 8 18 38
HISPANIC OR LATINO
Total number of patients with at least one condition 1 (6.7%) 0 0
Total number of conditions 2 0 0
trm B_2/3 1 (6.7%) 0 0
trm C_1/2 1 (6.7%) 0 0
NOT HISPANIC OR LATINO
Total number of patients with at least one condition 2 (13.3%) 6 (40.0%) 5 (33.3%)
Total number of conditions 6 18 38
trm B_1/3 0 3 (20.0%) 3 (20.0%)
trm B_2/3 1 (6.7%) 2 (13.3%) 3 (20.0%)
trm A_2/2 1 (6.7%) 1 (6.7%) 3 (20.0%)
trm B_3/3 0 2 (13.3%) 3 (20.0%)
trm C_2/2 1 (6.7%) 0 4 (26.7%)
trm D_2/3 1 (6.7%) 1 (6.7%) 3 (20.0%)
trm D_1/3 1 (6.7%) 1 (6.7%) 2 (13.3%)
trm D_3/3 0 1 (6.7%) 3 (20.0%)
trm C_1/2 1 (6.7%) 1 (6.7%) 1 (6.7%)
trm A_1/2 0 0 2 (13.3%)
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