sortList: Sort the chromosome list according to the chromosome number

In chromseq: Split Chromosome 'Fasta' File

Description

Sort the chromosome list according to the chromosome number

Usage

sortList(id = id, tex = tex, chrsig = "single")

Arguments

id	The identifier list of the Fasta file made by subFasID
tex	A chromosome Fasta file in list format made by readToList function
chrsig	The number of characters of the chromosome, either "single" or "double", the previous means a single character following "chr" in the Fasta identifier, the latter means two characters following "chr" in the Fasta identifier. eg."chr1,chrX,chrY,chrM" is "single";"chr10,chr11" is "double". If you want to obtain both "single" and "double" sorted list of chromosome, try "single" and "double" respectively

Value

The sorted chromosome Fasta file in list format.

Examples

data("tex")
data("text")
text<- replaceText(type = "text",input = text)
id <- subFasID(text = text)
tex2<- sortList(id=id,tex = tex,chrsig = "single")
tex3 <- sortList(id=id,tex = tex,chrsig = "double")

chromseq documentation built on July 1, 2020, 10:24 p.m.