Nothing
# install.packages("devtools")
devtools::install_github("eonurk/cinaR-genesets")
You can use these modules via setting geneset
argument in
cinaR:
library(cinaR)
library(cinaRgenesets)
data("VP2008")
cinaR(..., geneset = vp2008)
This package contains 5 genesets curated from different sources.
Immune system related modules from SLE patients published in Nature Communications (2020)
data("VP2008")
Curated from PBMC scRNA-seq data (published via cinaR
):
data("PBMC.scRNAseq")
These genesets are curated from wikipathways:
data("wiki")
Hand-picked subset of inflammation related pathways from wikipathways:
data("wiki.inf")
Major cell types curated from DICE database
data("dice.major")
You can send pull requests to make your contributions.
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