Man pages for cladoRcpp
C++ Implementations of Phylogenetic Cladogenesis Calculations
| 00-cladoRcpp-package | Phylogenetic probability calculations using Rcpp |
| areas_list_to_states_list_old | Convert a list of areas to a list of geographic ranges... |
| numstates_from_numareas | Calculate the number of states, given a certain number of... |
| rcpp_areas_list_to_states_list | Make a list of 0-based indices of possible combinations of... |
| rcpp_calc_anclikes_sp | Calculate probability of ancestral states below a speciation... |
| rcpp_calc_anclikes_sp_COOprobs | Faster version of rcpp_calc_anclikes_sp |
| rcpp_calc_anclikes_sp_COOweights_faster | Even faster version of rcpp_calc_anclikes_sp |
| rcpp_calc_anclikes_sp_prebyte | Calculate probability of ancestral states below a speciation... |
| rcpp_calc_anclikes_sp_rowsums | Calculate the number of cladogenesis events of nonzero... |
| rcpp_calc_anclikes_sp_using_COOprobs | Calculate ancestral likelihoods given a COO-like probability... |
| rcpp_calc_rowsums_for_COOweights_columnar | Calculate sum of weights for each ancestral state |
| rcpp_calc_splitlikes_using_COOweights_columnar | Calculate the split likelihoods using 'COO_weights_columnar' |
| Rcpp_combn_zerostart | Get all the combinations of descendent state pairs, in... |
| rcpp_convolve | Run C++ version of convolve(x,y, conj=TRUE, type="open") |
| rcpp_mult2probvect | Get the product of multiplying each pair of values in a... |
| rcpp_states_list_to_DEmat | C++ conversion of a states list to a dispersal-extinction... |
| strsplit3 | String splitting shortcut |
