as.number | Convert standard IDs to numbers (character) which can be used... |
ccd | Synthetic example dataset |
ccd_demographic_spell | Create demographic table with spell IDs |
ccd_demographic_table | Create the demographic tables, which includes all... |
ccd_select_table | Create the table for ccTable from ccRecord |
ccd_unique_spell | find the unique spell ID. |
ccEpisode-class | The S4 class which holds data of a single episode. |
ccRecord-class | The S4 class which holds all the CCHIC patient record -... |
ccTable_apply_filters | Apply all the setup filters. |
ccTable-class | Process the EHR data in table format |
ccTable_clean | Apply all the filters |
ccTable_create_cctable | Create a ccTable object |
ccTable_export_csv | Export the clean table as a CSV file |
ccTable_filter_categories | Categorical data filter |
ccTable_filter_missingness | Data missing filter |
ccTable_filter_nodata | No data filter |
ccTable_filter_range | Numerical range filter |
ccTable_reload_conf | Reload the YAML configuration file |
ccTable_reset | Reset the ccTable |
code2stname | Convert NHIC codes to the short names |
create2dclean | Clean table - low memory |
create_cctable | Create a ccTable object |
data.checklist | This a reference table of NHIC data items. |
data.quality.report | Create the data quality report |
data.quality.report.brc | Create the data quality report |
deltaTime | Convert calendar date-time to the time difference comparing... |
demg.distribution | demg.distribution Create a plot of the distribution of... |
demographic.data.completeness | Create a demographic completeness table (in pander table) |
extract_file_origin | Extract the original file name from a path and file removing... |
extract_info | Extract information from data.checklist |
file.summary | Produce a file summary table |
for_each_episode | loop over all episodes of a ccRecord object |
getEpisodePeriod | Get the length of stay based on the first and the last data... |
getXmlepisode | get the episode data from xml |
icnarc2diagnosis | Convert ICNARC codes to diagnosis (text) |
icnarc_table | ICNARC diagnosis reference table |
inrange | Check if the values of a vector v is in the given ranges. |
is.demographic | Check if the item NHIC code or short name belongs to the... |
is.drugs | Check if the item NHIC code or short name belongs to the... |
is.laboratory | Check if the item NHIC code or short name belongs to the... |
is.physiology | Check if the item NHIC code or short name belongs to the... |
ITEM_REF | Field reference table |
lenstay | Calculate the length of stay in the ICU. |
long2stname | Convert long names to short names. |
lookup.items | Lookup items information by keywords |
new.episode | Create a new episode |
physio.distribution | Plot the physiological data distribution. |
plot_episode | Individual episode chart |
plot_episode-ccEpisode-character-method | Episode chart |
plot_episode-ccEpisode-missing-method | Episode chart default fields |
plus-ccRecord-ccEpisode-method | Adding one ccEpisode object to a ccRecord |
plus-ccRecord-ccRecord-method | Combine two ccRecord objects |
plus-ccRecord-list-method | Adding a list of ccEpisode to ccRecord |
plus-ccRecord-NULL-method | Adding nothing to a ccRecord object and return the original... |
reallocateTimeRecord | Propagate a numerical delta time interval record. |
samplerate2d | Produce a pander table of sample rate of longitudinal data. |
site.info | Produce a site id reference table. |
StdId | S4 class to hold standard IDs such as "NIHR_HIC_ICU_0001" |
stname2code | Convert short names to NHIC codes |
stname2longname | Convert short names to long names. |
sub-ccRecord-ANY-method | Create a subset of ccRecord object from the original one via... |
sub-ccRecord-character-method | Create a ccRecord subsetting via selected sites. |
sub-sub-ccRecord-method | Subsetting a ccRecord object and return a list of ccEpisode... |
table1 | Produce the item specified table one. |
total.data.point | Return total data point of the ccRecord object. |
which.classification | Identify the classification - classification1 |
whichIsCode | give id number from NHIC code like "NIHR_HIC_ICU_xxxx" |
xml2Data | Convert the XML file to ccRecord |
xml.file.duration.plot | plot the duration of XML files. |
xmlLoad | load xml clinical data |
xml.site.duration.plot | Plot the XML duration in terms of sites. |
xmlTime2POSIX | Convert time from xml to POSIX format. |
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