clere: Simultaneous Variables Clustering and Regression

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Implements an empirical Bayes approach for simultaneous variable clustering and regression. This version also (re)implements in C++ an R script proposed by Howard Bondell that fits the Pairwise Absolute Clustering and Sparsity (PACS) methodology (see Sharma et al (2013) <DOI:10.1080/15533174.2012.707849>).

Author
Loic Yengo, Mickael Canouil
Date of publication
2016-03-22 20:20:14
Maintainer
Loic Yengo <loic.yengo@gmail.com>
License
GPL (>= 3)
Version
1.1.4

View on CRAN

Man pages

algoComp
Performances SEM algorithm versus MCEM
Clere-class
'Clere' class
clere-package
CLERE methodology for simultaneous variables clustering and...
clusters-methods
clusters method
fitClere
fitClere function
fitPacs
fitPacs function
numExpRealData
Performances of 9 methods for dimension reduction applied to...
numExpSimData
Performances of 9 methods for dimension reduction on data...
Pacs-class
'Pacs' class
plot-methods
plot method
predict-methods
predict method
summary-methods
summary method

Files in this package

clere
clere/inst
clere/inst/doc
clere/inst/doc/SimulatedDataExample.R
clere/inst/doc/clere.pdf
clere/inst/doc/clere.R
clere/inst/doc/RealDataExample.R
clere/inst/doc/Methods.R
clere/inst/doc/clere.Rnw
clere/inst/doc/ExampleProstate.R
clere/inst/doc/SEM_vs_MCEM_simulations.R
clere/src
clere/src/Makevars
clere/src/pacs.cpp
clere/src/conversion.h
clere/src/Fit.cpp
clere/src/ModelSelect.cpp
clere/src/ModelSelect.h
clere/src/clere.cpp
clere/src/IO.cpp
clere/src/Fit.h
clere/src/Makevars.win
clere/src/Model.cpp
clere/src/Model.h
clere/src/IO.h
clere/NAMESPACE
clere/data
clere/data/numExpRealData.RData
clere/data/numExpSimData.RData
clere/data/algoComp.RData
clere/R
clere/R/Clere.R
clere/R/sClere-Class.R
clere/R/fitPacs.R
clere/R/fitClere.R
clere/vignettes
clere/vignettes/RJournal.sty
clere/vignettes/upquote.sty
clere/vignettes/inconsolata.sty
clere/vignettes/clere.Rnw
clere/vignettes/trimspaces.sty
clere/vignettes/biblio.bib
clere/vignettes/environ.sty
clere/MD5
clere/build
clere/build/vignette.rds
clere/DESCRIPTION
clere/man
clere/man/summary-methods.Rd
clere/man/fitClere.Rd
clere/man/plot-methods.Rd
clere/man/clere-package.Rd
clere/man/fitPacs.Rd
clere/man/Pacs-class.Rd
clere/man/Clere-class.Rd
clere/man/numExpSimData.Rd
clere/man/numExpRealData.Rd
clere/man/clusters-methods.Rd
clere/man/algoComp.Rd
clere/man/predict-methods.Rd