clere: Simultaneous Variables Clustering and Regression

Implements an empirical Bayes approach for simultaneous variable clustering and regression. This version also (re)implements in C++ an R script proposed by Howard Bondell that fits the Pairwise Absolute Clustering and Sparsity (PACS) methodology (see Sharma et al (2013) <DOI:10.1080/15533174.2012.707849>).

Install the latest version of this package by entering the following in R:
install.packages("clere")
AuthorLoic Yengo, Mickael Canouil
Date of publication2016-03-22 20:20:14
MaintainerLoic Yengo <loic.yengo@gmail.com>
LicenseGPL (>= 3)
Version1.1.4

View on CRAN

Files

inst
inst/doc
inst/doc/SimulatedDataExample.R
inst/doc/clere.pdf
inst/doc/clere.R inst/doc/RealDataExample.R inst/doc/Methods.R
inst/doc/clere.Rnw
inst/doc/ExampleProstate.R inst/doc/SEM_vs_MCEM_simulations.R
src
src/Makevars
src/pacs.cpp
src/conversion.h
src/Fit.cpp
src/ModelSelect.cpp
src/ModelSelect.h
src/clere.cpp
src/IO.cpp
src/Fit.h
src/Makevars.win
src/Model.cpp
src/Model.h
src/IO.h
NAMESPACE
data
data/numExpRealData.RData
data/numExpSimData.RData
data/algoComp.RData
R
R/Clere.R R/sClere-Class.R R/fitPacs.R R/fitClere.R
vignettes
vignettes/RJournal.sty
vignettes/upquote.sty
vignettes/inconsolata.sty
vignettes/clere.Rnw
vignettes/trimspaces.sty
vignettes/biblio.bib
vignettes/environ.sty
MD5
build
build/vignette.rds
DESCRIPTION
man
man/summary-methods.Rd man/fitClere.Rd man/plot-methods.Rd man/clere-package.Rd man/fitPacs.Rd man/Pacs-class.Rd man/Clere-class.Rd man/numExpSimData.Rd man/numExpRealData.Rd man/clusters-methods.Rd man/algoComp.Rd man/predict-methods.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.