climbeR: Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests

Calculates first, and second order, average minimal depth of a maximal subtree for a forest object produced by the R 'ranger' package. This variable importance metric is implemented as described in Ishwaran et. al. ("High-Dimensional Variable Selection for Survival Data", March 2010, <doi:10.1198/jasa.2009.tm08622>).

Author
John Karlen [aut, cre]
Date of publication
2016-11-19 10:13:21
Maintainer
John Karlen <jkarlen@massmutual.com>
License
MIT + file LICENSE
Version
0.0.1

View on CRAN

Man pages

baseRPlotting
Plot Second Order vs First Order minimal depth of a maximal...
binForestByDepth
Bin Forest by Depth
calculateAMDMS
Forest Averaged Minimal Depth of a Maximal Subtree (AMDMS)
countSplitsPerVar
Count Splits Per Variable
getAndPlotMetric
Calculate the metric and make Second Order vs First Order...
lookForVarsAbsentInForest
Look for Variable ID's that didn't occur in the Forest.
plotAMDMSvsNumSplits
Plot metric vs number of splits per variable.
plotFirstAndSecondOrderMetric
Plot Second Order vs First Order, minimal depth of a maximal...
recursiveDepthBinning
Recursive Depth Binning
startRecursiveDepthBinning
Start Recursive Depth Binning

Files in this package

climbeR
climbeR/inst
climbeR/inst/doc
climbeR/inst/doc/climbeR_examples.Rmd
climbeR/inst/doc/climbeR_examples.R
climbeR/inst/doc/climbeR_examples.html
climbeR/tests
climbeR/tests/testthat.R
climbeR/tests/testthat
climbeR/tests/testthat/veteran_result.rds
climbeR/tests/testthat/test_climbeR.R
climbeR/tests/testthat/rg_veteran.rds
climbeR/NAMESPACE
climbeR/NEWS
climbeR/R
climbeR/R/tree_traversal_util.R
climbeR/R/plotting_util.R
climbeR/vignettes
climbeR/vignettes/climbeR_examples.Rmd
climbeR/MD5
climbeR/build
climbeR/build/vignette.rds
climbeR/DESCRIPTION
climbeR/man
climbeR/man/recursiveDepthBinning.Rd
climbeR/man/countSplitsPerVar.Rd
climbeR/man/plotFirstAndSecondOrderMetric.Rd
climbeR/man/binForestByDepth.Rd
climbeR/man/lookForVarsAbsentInForest.Rd
climbeR/man/calculateAMDMS.Rd
climbeR/man/startRecursiveDepthBinning.Rd
climbeR/man/getAndPlotMetric.Rd
climbeR/man/plotAMDMSvsNumSplits.Rd
climbeR/man/baseRPlotting.Rd
climbeR/LICENSE