NEWS.md

In clintools: Tools for Clinical Research

NEWS

Versioning

Releases will be numbered with the following semantic versioning format:

<major>.<minor>.<patch>

And constructed with the following guidelines:

• Breaking backward compatibility bumps the major (and resets the minor and patch)

• New additions without breaking backward compatibility bumps the minor (and resets the patch)

• Bug fixes and misc changes bumps the patch

CHANGES IN clintools VERSION 0.9.10.1

• Bug fixed of cdm.fig and cdm.miss

CHANGES IN clintools VERSION 0.9.10

• Revamped tbl to include Cox proportional hazards model
• Added comparerel to compare reliability estimates
• Minor Bug fixes

CHANGES IN clintools VERSION 0.9.9

• Updated calcrel to use confintfor SRD instead of confint.default
• Added paired t.test to calcrel for internal consistency.
• Revamped tbl to include both summary statistics and statistical analyses.
• Added cdm.miss and cdm.fig
• Added questionaire

CHANGES IN clintools VERSION 0.9.8

• Added calcrel to calculate reliability estimates.

CHANGES IN clintools VERSION 0.9.7

• Updated PLR3000 to accept recordings without marking.

CHANGES IN clintools VERSION 0.9.6

• Added the a dynamic_artefacts setting to the dilations function and documentation. Used to dynamically assess artefacts. Also renamed artefacts to static_artefacts.

CHANGES IN clintools VERSION 0.9.5

• Added the a resting_delay setting to the dilations function and documentation. Used to assess delay the subsequent period for assessment.

CHANGES IN clintools VERSION 0.9.4

• Added the dilations function and documentation. Used to assess dilations from PLR3000.

CHANGES IN clintools VERSION 0.9.3

• Updated sRCT function and documentation. Now applies random effect of site, and add relative risks together using ln-number instead of absolute numbers

CHANGES IN clintools VERSION 0.9.2

• Updated clinmon documentation

CHANGES IN clintools VERSION 0.9.1

• Optimised rrGcomp
• Updated clinmon documentation
• Minor bugfixing for PLR3000

CHANGES IN clintools VERSION 0.9.0

• Added the sRCT-function to generate simulated randomized clinical trials. Much more work to add

• Added the rrGcomp-function to calculate relative risk using G-computation from an individual participant dataframe.

• Added the PLR3000-function to convert data extracted from NeurOptics PLR-3000 to a long format dataframe.

CHANGES IN clintools VERSION 0.8.5

• Added the iscus-function to convert XML microdialysis data to a dataframe.

CHANGES IN clintools VERSION 0.8.2

• Small bugfixes for the TFA and clinmon functions, especially the overlapping functionality did not produce Mx, PRx or CPPopt.

CHANGES IN clintools VERSION 0.8.1

• Updated descriptions and helper-files.

CHANGES IN clintools VERSION 0.8.0

• Changed name from clinmon to clintools to allow for inclusion of other function than only hemodynamic indices.

• Based on the matlab-script created by David Simpsons in 2015 the TFA-function have been added to calculate the transfer function analysis.

• The test data from 2015 has also been addedd data(tfa_sample_data), data(tfa_sample_data1), and data(tfa_sample_data2) to underline the script generates the same results as the Matlab-script.

• Added the ortable-function which generates an Odds ratio table from a logistic regression glm.

CHANGES IN clintools VERSION 0.5.5

• Simplified the package, to calculate all the indices in clinmon(). clinmon() uses a continuous recording and returns a dataframe with hemodynamic indices for every period, epoch or block depending on the chosen output. Includes COest, CPPopt, CVRi, Dx, Mx, PI, PRx, PWA, RI, and Sx (see details).

• Test data set is added to the package in two resolutions 1000 Hz, and 10 Hz. The corresponding deleter-file is also added.

CHANGES IN clintools VERSION 0.2.1

• Corrected the error, that missing values from artefacts deletion in blocks and epochs results in a errorgenous correlation coefficient.

CHANGES IN clintools VERSION 0.2.0

• This is the first version of the package put on CRAN

• Correlation coefficient based indices Dx, Sx, Mx and PRx are functional, and validated through ICM+

• Furthermore indices such as CVRi, PI, RI, PWA, and CO are functional.

• CPPopt and TFA will be added in future versions

clintools documentation built on May 29, 2024, 7:14 a.m.