Man pages for clipp
Calculating Likelihoods by Pedigree Paring
| clipp-package | clipp: Calculate Likelihoods by Pedigree Paring |
| combine_loci | Combine the genotype frequencies and transition matrices of... |
| dat_large | Simulated data on one family with approximately 10,000... |
| dat_small | Simulated data on 10 families with approximately 100 members... |
| geno_freq_monogenic | Calculate genotype frequencies from allele frequencies using... |
| geno_freq_phased | Calculate phased genotype frequencies from allele... |
| geno_freq_polygenic | Genotype frequencies for the hypergeometric polygenic model |
| genotype_probabilities | Calculate genotype probabilities for a target person |
| pedigree_loglikelihood | Calculate the log-likelihoods of pedigrees |
| penet_large | A penetrance matrix relating the phenotypes in 'dat_large' to... |
| penet_small | A penetrance matrix relating the phenotypes of 'dat_small' to... |
| trans_monogenic | The transmission matrix for a single genetic locus |
| trans_phased | The transmission matrix for phased genotypes |
| trans_polygenic | The transmission matrix for the hypergeometric polygenic... |
