Man pages for clmstan
Cumulative Link Models with 'CmdStanR'
| aep_cdf | Asymmetric Exponential Power (AEP) link CDF |
| apply_custom_link_priors | Apply custom prior specifications for link parameters |
| apply_priors_to_stan_data | Apply user priors to Stan data |
| aranda_ordaz_cdf | Aranda-Ordaz asymmetric link CDF |
| cauchy | Cauchy Distribution for Prior Specification |
| c.clm_prior_spec | Combine Multiple Prior Specifications |
| clm_cdf | Unified CDF dispatcher for clmstan |
| clm_prior | Prior Specification for clmstan |
| clm_stan | Fit a Cumulative Link Model using CmdStanR |
| clmstan-class | clmstan S3 Class |
| clmstan-package | clmstan: Cumulative Link Models with CmdStanR |
| cloglog_cdf | Complementary log-log CDF |
| coef.clmstan | Extract coefficients from clmstan objects |
| compute_probs_all | Compute category probabilities for all draws |
| compute_probs_single | Compute category probabilities for a single draw |
| compute_r_eff | Compute relative effective sample size for log-likelihood |
| convert_prior_spec_to_legacy | Convert Prior Specification to Internal Format |
| diagnostics | MCMC Diagnostics for clmstan objects |
| extract_acf | Extract ACF values from clmstan object |
| extract_link_param_draws | Extract link parameter draws for full model |
| extract_link_params_summary | Extract posterior summary for link parameters |
| extract_log_lik | Extract log-likelihood matrix from clmstan object |
| extract_posterior_summary | Extract posterior summary for specified parameters |
| extract_prediction_draws | Extract posterior draws needed for prediction |
| extract_y_rep | Extract y_rep from Stan fit |
| fitted.clmstan | Fitted values for clmstan objects |
| flat | Flat (Improper Uniform) Prior Distribution |
| format_dist | Format a distribution object as a string |
| gamma | Gamma Distribution for Prior Specification |
| get_base_link_params | Get base (fixed) link parameters from object |
| get_clmstan_draws | Get draws for plotting with bayesplot |
| get_coef_names | Get coefficient names from design matrix |
| get_default_link_prior | Get default prior for a link parameter |
| get_default_priors | Get default priors for a threshold structure |
| get_default_threshold_prior | Get default priors for threshold parameters |
| get_link_param_for_draw | Get link parameters for a specific draw |
| get_link_params | Get required parameters for a link function |
| get_link_type | Get link type number for Stan |
| get_model_name | Get Stan model name based on threshold and full model flag |
| get_sp_base_type | Get base type number for SP link |
| get_threshold_names | Generate threshold names in ordinal::clm style |
| get_threshold_params | Get threshold parameter information |
| gev_cdf | Generalized Extreme Value (GEV) link CDF |
| is.clmstan | Check if object is clmstan |
| is_flexible_link | Check if a link function requires parameters |
| link_functions | Available Link Functions |
| loggamma_cdf | Log-gamma link CDF |
| loglog_cdf | Log-log CDF |
| loo.clmstan | Leave-One-Out Cross-Validation for clmstan objects |
| make_design_matrix | Create design matrix |
| map_class_to_params | Map Parameter Class and Distribution to Legacy Parameter... |
| needs_full_model | Check if any link parameter requires estimation |
| new_clmstan | Create a clmstan object (internal constructor) |
| normal | Normal Distribution for Prior Specification |
| parse_clm_formula | Parse formula for CLM |
| plot.clmstan | Plot method for clmstan objects |
| posterior_predict.clmstan | Posterior predictive distribution for clmstan objects |
| predict.clmstan | Predict method for clmstan objects |
| prepare_link_params | Prepare link parameters for Stan |
| prepare_link_params_full | Prepare link parameters for full Stan model |
| prepare_prediction_matrix | Prepare design matrix for prediction |
| prepare_stan_data | Prepare data for Stan model |
| prepare_stan_data_dispatch | Dispatch to appropriate data preparation function |
| prepare_stan_data_equidistant | Prepare data for equidistant threshold Stan model |
| prepare_stan_data_full | Prepare data for full Stan model with link parameter... |
| prepare_stan_data_symmetric | Prepare data for symmetric threshold Stan model |
| print.clm_dist | Print method for clm_dist objects |
| print.clm_prior | Print method for clm_prior objects |
| print.clm_prior_list | Print method for clm_prior_list objects |
| print.clm_prior_spec | Print method for clm_prior_spec objects |
| print.clmstan | Print method for clmstan objects |
| print.summary.clmstan | Print method for summary.clmstan objects |
| prior | Specify Prior Distributions |
| sp_cdf | Symmetric Power (SP) link CDF |
| student_t | Student-t Distribution for Prior Specification |
| summarize_class_draws | Summarize class prediction draws |
| summarize_probs_draws | Summarize probability draws |
| summary.clmstan | Summary method for clmstan objects |
| supported_links | Get supported link functions |
| supported_thresholds | Get supported threshold structures |
| validate_full_params | Validate full model parameters |
| validate_link | Check if a link function is valid |
| validate_link_params | Validate link parameters |
| validate_prediction_input | Validate prediction inputs |
| validate_prior | Validate prior specification for a model |
| validate_prior_class_dist | Validate that the distribution is compatible with the... |
| validate_prior_values | Validate prior values |
| validate_threshold | Validate threshold specification |
| waic.clmstan | Widely Applicable Information Criterion for clmstan objects |
